Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30801X
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    31   0.043
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    29   0.23 
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    28   0.40 
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   0.93 
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    24   4.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   6.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    24   6.5  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    24   6.5  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    23   8.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    23   8.6  

>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 31.1 bits (67), Expect = 0.043
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 166 VVLAALRGAVPFSPYATHGPHSPSAGSSLLANTTRHFXTRSITQ 297
           V L +L G  P+  Y+  GP +P+A +S  ANT R F   SI++
Sbjct: 37  VSLLSLSGFHPYRAYSILGPKTPTAFNS--ANTVRFFSFSSISR 78


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 93  LRLRCYSTAIRQSNFTVNCGRWDASSISSFTWCGA 197
           L L C S+     NF ++CG WD  S SSF   G+
Sbjct: 335 LNLCCASSETEYFNFGLSCGFWDRDS-SSFYGLGS 368


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 102 RCYSTAIRQSNFTVNCGR 155
           R +S A+  SNF +NCGR
Sbjct: 7   RTFSRALSSSNFKINCGR 24


>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 35  WALGVGISCVGRAVERG 85
           W +G+   CVGR +E G
Sbjct: 115 WGMGIATECVGRVIEFG 131


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 175 AALRGAVPFSPYATHGPHSPSAGSSLLANTT 267
           AA    V FSP +T    +P++  SL +NT+
Sbjct: 185 AAASPTVSFSPASTSENLTPTSSKSLASNTS 215


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 187 GAVPFSPYATHGPHSPSAGSSLLANTTRHFXTRSITQRMPANT 315
           G  PFSP+ +    SPS  ++++      + +R +  R+  NT
Sbjct: 697 GPTPFSPFRSFQELSPSEQAAMVQKRIADY-SRKVYHRLYDNT 738


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 271 GESCWLAVNYRHWANAAR 218
           G  CW++ N  HW +AAR
Sbjct: 9   GSECWVSNNNGHW-DAAR 25


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 17  DAVNIRWALGVGISCVGRAVERGR 88
           DAVN+R  +G G   + RA++  R
Sbjct: 225 DAVNVRTNMGEGTQHMDRAIKSAR 248


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 196 PFSPYATHGPHSPSAGS 246
           P+S Y+T  PH   AGS
Sbjct: 137 PYSSYSTDAPHYYHAGS 153


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 173 NTTSIPPATVDSKVRLANSSAVATQA*NGARARPHD 66
           NT+S  P+ VDS V     S + TQ  +  R +  D
Sbjct: 630 NTSSTQPSQVDSLVPTQLDSTIPTQIDSVQRNKDQD 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,587
Number of Sequences: 5004
Number of extensions: 18706
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)