Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30801X
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0653 - 18429736-18431379 33 0.068
05_05_0392 + 24629528-24630442 30 0.36
03_02_0002 + 4853886-4854812 29 0.63
01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353... 29 1.1
07_01_1093 + 10033403-10033984 28 1.9
05_07_0084 - 27587307-27589175 27 2.6
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 27 2.6
01_03_0301 - 14785898-14786299,14786785-14787234 27 2.6
09_01_0025 - 441528-444284 27 3.4
07_01_0671 + 5036069-5037670 27 3.4
05_07_0175 - 28164252-28164529,28165381-28166560 27 3.4
02_05_0762 + 31562589-31563272 27 3.4
03_06_0310 - 33045991-33046127,33046617-33046818 26 5.9
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 26 5.9
05_06_0228 + 26570066-26571352 26 7.8
05_05_0302 - 23944802-23945857 26 7.8
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 26 7.8
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 26 7.8
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 26 7.8
>04_03_0653 - 18429736-18431379
Length = 547
Score = 32.7 bits (71), Expect = 0.068
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 284 RVWKWRVVLASSELPALGECGPWVAYGENGTAPRKAANTTSIPPATVDSKVRLAN 120
R W W++V A + P GE G G +G P AA + + + S+V+ A+
Sbjct: 487 RYWDWKLVAAEAAAPREGEVG---GGGGDGERPTAAAEWSEVEKMVIRSQVKSAS 538
>05_05_0392 + 24629528-24630442
Length = 304
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 212 AYGENGTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NGARARPHDQRM 57
A GE APR+ + PP T + KV+ S A ARARP +R+
Sbjct: 20 AAGEEVEAPRRRVDQARDPPPTEEEKVKEVLSETPAP----SARARPRQRRV 67
>03_02_0002 + 4853886-4854812
Length = 308
Score = 29.5 bits (63), Expect = 0.63
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = -1
Query: 236 LGECG-PWVAYGENGT----APRKAANTTSIPPATVDSKVRLANSSAVATQA 96
+G C P++++ E GT A R+A +T S P VDSK +S AVA +A
Sbjct: 67 VGGCSDPFLSHAELGTVVAPAKRQAKDTASPPHVRVDSKSGQDSSLAVAFRA 118
>01_06_1117 -
34633311-34634030,34634434-34634873,34635320-34635370,
34635522-34635642
Length = 443
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 253 AVNYRHWANAARGSRTAKTAPHHVKLLILLASHLPQL 143
+ YR+ N+ GSRT T PH KL L+ S L
Sbjct: 356 SATYRNVYNSTSGSRTDPTVPHCSKLSPLVTSESASL 392
>07_01_1093 + 10033403-10033984
Length = 193
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 40 LRCWDFMRWSCGRARAPFY 96
L W+ +WS GR APFY
Sbjct: 108 LGIWEVAKWSEGREEAPFY 126
>05_07_0084 - 27587307-27589175
Length = 622
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 242 PALGECGPWVAYGENGTAPRKAANTTSIPPATVDSKVRL 126
P + P + E+G AP A T +PP SK L
Sbjct: 49 PGQAKRKPKIEQEEDGAAPATATGLTKVPPLGAPSKAAL 87
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 48 LGFHALVVRSSAGAILRLRCYSTAIRQSNFTVNCGRWDASSISSFTWCGAV--FAVRDPR 221
LG H + R + L LRC+ A R + F N R S + FTW G + DP
Sbjct: 66 LGEHGRLNREAWARPLPLRCHDIAPRVAPFLHNAVREHGS--ACFTWFGPTPKVTITDPD 123
Query: 222 AA 227
A
Sbjct: 124 LA 125
>01_03_0301 - 14785898-14786299,14786785-14787234
Length = 283
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 37 GLRCWDFMRWSCGRARAPFYACVXXXXXXXXXXXXXXVAGGMLVVLAALRGAVPFSP 207
G R W+ + S RARAP CV AG ++ +LR F+P
Sbjct: 11 GRRAWELL--SAVRARAPLVHCVTNLVSMDIAANALLAAGASPAMVHSLREVPEFTP 65
>09_01_0025 - 441528-444284
Length = 918
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 175 AALRGAVPFSPYATHGPHSPSAGSSL 252
A L +PF + H PHS S G +L
Sbjct: 80 ATLHTNIPFPAFQFHPPHSKSTGDAL 105
>07_01_0671 + 5036069-5037670
Length = 533
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -2
Query: 250 VNYRHWANAARGSRTAKTAPHHVKLLILLASHLPQLTVKLDWRIAVL*QRKRKMAPALD 74
V +R W A+ G+ + P + LLA++ P+ + L + VL +R R++ A+D
Sbjct: 22 VRWRRWTFASLGALLSNLGPVWFLIAPLLAAYAPR-RLLLTYFNLVLRRRARRLLAAVD 79
>05_07_0175 - 28164252-28164529,28165381-28166560
Length = 485
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 197 GTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NGARARPH 69
G PR A T + P TV +K +A + TQ N A+ H
Sbjct: 426 GQGPRTGARLTPVIPVTVKAKAVVAGPGKLFTQNGNLNAAKIH 468
>02_05_0762 + 31562589-31563272
Length = 227
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -1
Query: 233 GECGPWVAYGENGTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NGARAR 75
GE G WVAYG G R S+ A + + V T+A GAR R
Sbjct: 70 GEDGCWVAYGRRGMMRRLPPPLPSLRGAM--RRTCTKDGRLVVTEAPAGARRR 120
>03_06_0310 - 33045991-33046127,33046617-33046818
Length = 112
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 116 SAVATQA*NGARARPHDQRMKSQHLRPIVYSPR 18
S A ++ + + RPH + +K HL+ ++ SPR
Sbjct: 70 SGYADRSNHHPKERPHLKDLKQAHLKDLMQSPR 102
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 254 SSELPALGECGPWVAYGENGTAPRKAANTTSIPPATVDSKVRLANSSA 111
SS P+ + PW+ GE+G + A PP V + LA + A
Sbjct: 73 SSPAPSAEQVVPWIVRGEDGKPSMRTA-----PPPDVLQAIALAEAEA 115
>05_06_0228 + 26570066-26571352
Length = 428
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 272 WRVVLASSELPALGECGPWVAYGEN 198
WRV LA E PA PW+A E+
Sbjct: 40 WRVALAKLEAPAPPPPLPWLALPES 64
>05_05_0302 - 23944802-23945857
Length = 351
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 244 SSLLANTTRHFXTRSITQRMPANT 315
SSL+A +TRH+ RSI + P T
Sbjct: 211 SSLIAASTRHYLLRSIIKDHPTLT 234
>03_02_0359 -
7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 37 GLRCWDFMRWSCGRAR 84
G+RCW + WS RAR
Sbjct: 914 GIRCWGPLPWSSRRAR 929
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 87 AILRLRCYSTAIRQSNFTVNCGRWDASSISSFTWCGAVFAVRDPRAAF 230
A+ LRC ST + ASS SS T+ FA+R AAF
Sbjct: 78 ALHHLRCRSTPRDSLTYNTLLNHLPASSSSSTTFRLFRFAMRHAHAAF 125
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 194 TAPRKAANTTSIPPATVDSKVRLANSSA 111
T+PR ++S+PPA+ S A+SS+
Sbjct: 46 TSPRPTLRSSSLPPASTPSPSSSASSSS 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,360
Number of Sequences: 37544
Number of extensions: 161205
Number of successful extensions: 648
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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