Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30801X
(323 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031) 28 2.0
SB_10663| Best HMM Match : Extensin_2 (HMM E-Value=3) 28 2.0
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_23355| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4) 27 3.5
SB_23266| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 27 4.6
SB_32543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
>SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 3 GLTVSTR*IYDGP*VLGFHALVVRSSAGAILRLRCYSTAI 122
GLT S + IY+ +LGF A +V AG +L L Y + +
Sbjct: 151 GLTSSIKEIYNEHGILGFFAGLVPRIAGEVLSLWMYRSVV 190
>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
Length = 969
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = -1
Query: 209 YGENGTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NGARARPHDQRMKSQHLRPIV 30
Y TAP + NT P DS++++AN+S A+ + + P +R +RP
Sbjct: 7 YSPTSTAP-SSPNT---PRHQTDSRLQIANASIEASPQPISSYSSPFARRSLYSPIRPRY 62
Query: 29 YSPRRHSK 6
SP R K
Sbjct: 63 NSPPRVDK 70
>SB_10663| Best HMM Match : Extensin_2 (HMM E-Value=3)
Length = 281
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = -1
Query: 209 YGENGTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NGARARPHDQRMKSQHLRPIV 30
Y TAP + NT P DS++++AN+S A+ + + P +R +RP
Sbjct: 7 YSPTSTAP-SSPNT---PRHQTDSRLQIANASIEASPQPISSYSSPFARRSLYSPIRPRY 62
Query: 29 YSPRRHSK 6
SP R K
Sbjct: 63 NSPPRVDK 70
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -1
Query: 203 ENGTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NGARARPHDQRMKSQHLRPIVYS 24
EN T+ A ++ + P DS++++AN+S A+ + + P +R +RP S
Sbjct: 207 ENPTST--APSSPNTPRHQTDSRLQIANASIEASPQPISSYSSPFARRSLYSPIRPRYNS 264
Query: 23 PRRHSK 6
P R K
Sbjct: 265 PPRVDK 270
>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 193 VPFSPYATHGPHSPSAGSSLLANTTRHFXTRSITQRMPAN 312
+P P ATH H P+ ++L + R+F + + Q P N
Sbjct: 158 IPKQPIATHDQHLPNDATNLQTD-FRNFNVQPLNQMSPNN 196
>SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 27.5 bits (58), Expect = 2.6
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Frame = -1
Query: 296 CVIERVWKWRVVLASSELPALGECG------PWVAYGENGTAPRKAANTTSIPPATVDSK 135
C++ W+ R V ASS L L + G WV G + + K + + DS
Sbjct: 370 CLLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRCKTTASAKLACLQPDST 429
Query: 134 VRLANSSAVATQA*NGARARPHDQRMKSQHLRPIVYSPRRHS 9
+ A++A G R +S L+ Y+ RR S
Sbjct: 430 PFSSGDWGRASKAREGDRCSESSAHARSGGLKRNAYNERRAS 471
>SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -1
Query: 203 ENGTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NGARARPHDQRMKSQHLRPIVYS 24
EN T+ A ++ + P DS++++AN+S A+ + + P +R +RP S
Sbjct: 567 ENPTST--APSSPNTPRHQTDSRLQIANASIEASPQPISSYSSPFARRSLYSPIRPRYNS 624
Query: 23 PRRHSK 6
P R K
Sbjct: 625 PPRVDK 630
>SB_23355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 16 RRGEYTMGLRCWDFMRWSCGRARAPFYAC 102
RRG+ T + W+CG A A FYAC
Sbjct: 95 RRGQETSNMNS---KVWACGLAIATFYAC 120
>SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)
Length = 536
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 203 ENGTAPRKAANTTSIPPATVDSKVRLANSSAVATQA*NG 87
ENG +PR A + S+ PA RLA + +A NG
Sbjct: 353 ENGGSPRSAEDGGSLRPAENCGSPRLAENGGSPQRAENG 391
>SB_23266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 135 FTV-NCGRWDASSISSFTW 188
FT+ NCG W ASS+S W
Sbjct: 118 FTLTNCGDWHASSVSKKDW 136
>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 1431
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 135 FTV-NCGRWDASSISSFTW 188
FT+ NCG W ASS+S W
Sbjct: 300 FTLTNCGDWHASSVSKKDW 318
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 135 FTV-NCGRWDASSISSFTW 188
FT+ NCG W ASS+S W
Sbjct: 461 FTLTNCGDWHASSVSKKDW 479
>SB_32543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 135 FTV-NCGRWDASSISSFTW 188
FT+ NCG W ASS+S W
Sbjct: 52 FTLTNCGDWHASSVSKKDW 70
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 151 AGGMLVVLAALRGAVPFSPYATHGPHSPSAGS 246
A MLV L+ R PFS T P SPS+ S
Sbjct: 225 AAAMLVSLSNSRNPTPFSNPTTPRPISPSSPS 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,844,009
Number of Sequences: 59808
Number of extensions: 163740
Number of successful extensions: 477
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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