Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30801X
(323 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U48250-1|AAC72247.1| 334|Homo sapiens protein kinase C-binding ... 29 4.3
BC047511-1|AAH47511.1| 323|Homo sapiens oligodendrocyte lineage... 29 4.3
BC036245-1|AAH36245.1| 323|Homo sapiens OLIG2 protein protein. 29 4.3
AF221520-1|AAF61215.1| 357|Homo sapiens basic helix-loop-helix ... 29 4.3
BC130341-1|AAI30342.1| 752|Homo sapiens C20orf12 protein protein. 28 7.4
AL121893-3|CAI12511.1| 585|Homo sapiens chromosome 20 open read... 28 7.4
AL121893-2|CAI12510.1| 550|Homo sapiens chromosome 20 open read... 28 7.4
AL049646-2|CAI21831.1| 585|Homo sapiens chromosome 20 open read... 28 7.4
AL049646-1|CAI21830.1| 550|Homo sapiens chromosome 20 open read... 28 7.4
AK131451-1|BAD18596.1| 574|Homo sapiens protein ( Homo sapiens ... 28 7.4
AK055544-1|BAB70949.1| 401|Homo sapiens protein ( Homo sapiens ... 28 7.4
AK001462-1|BAA91706.1| 503|Homo sapiens protein ( Homo sapiens ... 28 7.4
BC057387-1|AAH57387.1| 221|Homo sapiens LSM14B protein protein. 27 9.8
AL137077-6|CAI11049.1| 296|Homo sapiens LSM14 homolog B (SCD6, ... 27 9.8
AL137077-5|CAI11048.1| 223|Homo sapiens LSM14 homolog B (SCD6, ... 27 9.8
AL137077-4|CAI11047.1| 221|Homo sapiens LSM14 homolog B (SCD6, ... 27 9.8
AJ504722-1|CAD43282.1| 130|Homo sapiens immunoglobulin heavy ch... 27 9.8
AJ504721-1|CAD43281.1| 130|Homo sapiens immunoglobulin heavy ch... 27 9.8
>U48250-1|AAC72247.1| 334|Homo sapiens protein kinase C-binding
protein RACK17 protein.
Length = 334
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -2
Query: 319 LMYSPACAAL*NAXGSGESCWLAVNYRHWANAARGSRTAKTAPHHVKLLILLASHLPQLT 140
L+ SP+ AA G G + ++HW + P H + + A LP+LT
Sbjct: 271 LLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQVPPPHHHVSAMGAGSLPRLT 330
>BC047511-1|AAH47511.1| 323|Homo sapiens oligodendrocyte lineage
transcription factor 2 protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -2
Query: 319 LMYSPACAAL*NAXGSGESCWLAVNYRHWANAARGSRTAKTAPHHVKLLILLASHLPQLT 140
L+ SP+ AA G G + ++HW + P H + + A LP+LT
Sbjct: 260 LLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQVPPPHHHVSAMGAGSLPRLT 319
>BC036245-1|AAH36245.1| 323|Homo sapiens OLIG2 protein protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -2
Query: 319 LMYSPACAAL*NAXGSGESCWLAVNYRHWANAARGSRTAKTAPHHVKLLILLASHLPQLT 140
L+ SP+ AA G G + ++HW + P H + + A LP+LT
Sbjct: 260 LLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQVPPPHHHVSAMGAGSLPRLT 319
>AF221520-1|AAF61215.1| 357|Homo sapiens basic helix-loop-helix
protein class B 1 protein.
Length = 357
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -2
Query: 319 LMYSPACAAL*NAXGSGESCWLAVNYRHWANAARGSRTAKTAPHHVKLLILLASHLPQLT 140
L+ SP+ AA G G + ++HW + P H + + A LP+LT
Sbjct: 294 LLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQVPPPHHHVSAMGAGSLPRLT 353
>BC130341-1|AAI30342.1| 752|Homo sapiens C20orf12 protein protein.
Length = 752
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 342 CGRWNLWEASFCGWCGAMLGI 362
>AL121893-3|CAI12511.1| 585|Homo sapiens chromosome 20 open reading
frame 12 protein.
Length = 585
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 169 CGRWNLWEASFCGWCGAMLGI 189
>AL121893-2|CAI12510.1| 550|Homo sapiens chromosome 20 open reading
frame 12 protein.
Length = 550
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 140 CGRWNLWEASFCGWCGAMLGI 160
>AL049646-2|CAI21831.1| 585|Homo sapiens chromosome 20 open reading
frame 12 protein.
Length = 585
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 169 CGRWNLWEASFCGWCGAMLGI 189
>AL049646-1|CAI21830.1| 550|Homo sapiens chromosome 20 open reading
frame 12 protein.
Length = 550
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 140 CGRWNLWEASFCGWCGAMLGI 160
>AK131451-1|BAD18596.1| 574|Homo sapiens protein ( Homo sapiens
cDNA FLJ16603 fis, clone TESTI4008058. ).
Length = 574
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 342 CGRWNLWEASFCGWCGAMLGI 362
>AK055544-1|BAB70949.1| 401|Homo sapiens protein ( Homo sapiens
cDNA FLJ30982 fis, clone HHDPC2000315. ).
Length = 401
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 169 CGRWNLWEASFCGWCGAMLGI 189
>AK001462-1|BAA91706.1| 503|Homo sapiens protein ( Homo sapiens
cDNA FLJ10600 fis, clone NT2RP2004999. ).
Length = 503
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 147 CGRWDASSISSFTWCGAVFAV 209
CGRW+ S WCGA+ +
Sbjct: 93 CGRWNLWEASFCGWCGAMLGI 113
>BC057387-1|AAH57387.1| 221|Homo sapiens LSM14B protein protein.
Length = 221
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 193 VPFSPYATHGPHSPSAGSSLLA 258
VP+SP+ P+ P A SSLL+
Sbjct: 112 VPYSPFRGMAPYGPLAASSLLS 133
>AL137077-6|CAI11049.1| 296|Homo sapiens LSM14 homolog B (SCD6, S.
cerevisiae) protein.
Length = 296
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 193 VPFSPYATHGPHSPSAGSSLLA 258
VP+SP+ P+ P A SSLL+
Sbjct: 138 VPYSPFRGMAPYGPLAASSLLS 159
>AL137077-5|CAI11048.1| 223|Homo sapiens LSM14 homolog B (SCD6, S.
cerevisiae) protein.
Length = 223
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 193 VPFSPYATHGPHSPSAGSSLLA 258
VP+SP+ P+ P A SSLL+
Sbjct: 112 VPYSPFRGMAPYGPLAASSLLS 133
>AL137077-4|CAI11047.1| 221|Homo sapiens LSM14 homolog B (SCD6, S.
cerevisiae) protein.
Length = 221
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 193 VPFSPYATHGPHSPSAGSSLLA 258
VP+SP+ P+ P A SSLL+
Sbjct: 112 VPYSPFRGMAPYGPLAASSLLS 133
>AJ504722-1|CAD43282.1| 130|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 130
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 13 CRRGEYTMGLRCWDFMRWSCG 75
C RG Y+ G WDF W G
Sbjct: 95 CARGPYSYGSGSWDFDYWGQG 115
>AJ504721-1|CAD43281.1| 130|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 130
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 13 CRRGEYTMGLRCWDFMRWSCG 75
C RG Y+ G WDF W G
Sbjct: 95 CARGPYSYGSGSWDFDYWGQG 115
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,964,119
Number of Sequences: 237096
Number of extensions: 846470
Number of successful extensions: 2452
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2452
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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