Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30801X
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    27   3.1  
AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical...    26   5.4  
Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical p...    26   7.2  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 201 FAVRDPRAAFAQCR*FTASQHDSPLPXAFY--NAAHAGEY 314
           +A+R+PR+   +CR  T  +   P    FY  N+ H   Y
Sbjct: 295 YAIRNPRSDVMKCRSHTEREQHFPFDSFFYIRNSEHEFSY 334


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 201 FAVRDPRAAFAQCR*FTASQHDSPLPXAFY--NAAHAGEY 314
           +A+R+PR+   +CR  T  +   P    FY  N+ H   Y
Sbjct: 295 YAIRNPRSDVMKCRSHTEREQHFPFDSFFYIRNSEHEFSY 334


>AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical
           protein Y71F9B.14 protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 194 TAPRKAANTTSIPPATVDSKVRLANSSAVA 105
           TAP     TT IPPA V ++  +  + A A
Sbjct: 289 TAPATDPPTTMIPPAVVTTEANIITTEATA 318


>Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical
           protein Y57G11C.42 protein.
          Length = 661

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 185 RKAANTTSIPPATVDSK 135
           +K AN  SIPP T+D K
Sbjct: 415 KKPANVKSIPPFTIDGK 431


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 269 RVVLASSELPALGECGPWVAYGE 201
           +  +  +E   + ECGPW  +GE
Sbjct: 620 KATIRFNEKDLIFECGPWTCFGE 642


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 203 ENGTAPRKAANTTSIPPATVDSKVRLANSSAVAT 102
           E  T P+    TT++PP T  S       +   T
Sbjct: 204 ETTTTPQSTTTTTTVPPTTTTSTTTTTTIATTTT 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,857,662
Number of Sequences: 27780
Number of extensions: 113483
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)