Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30801X
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   6.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 260 LASSELPALGECGP 219
           +ASS + + GECGP
Sbjct: 162 IASSGVVSAGECGP 175


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 78  STARPTHEIPTPKAHRIFTAST 13
           S  +P H  P  K HR  +AST
Sbjct: 269 SDVQPGHGSPPVKQHRSSSAST 290


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  LRCYSTAIRQSNFTVNCGRWDASSISSF 182
           ++ +   +  ++++VN G W   S SSF
Sbjct: 395 MKVFDELLLDADWSVNAGMWMWLSCSSF 422


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 179  AANTTSIPPATVDSKVRL 126
            AA  T+I P T D+K +L
Sbjct: 1109 AAAATNIRPGTADNKPQL 1126


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 28  YTMGLRCWDFMRW 66
           ++MG+ CW+ M +
Sbjct: 822 WSMGIVCWEVMSY 834


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -1

Query: 212 AYGENGTAPRKAANTTSIPPATVDSKVRLANSSAVAT 102
           A G N  +    A  +  PPA+  S    A S   +T
Sbjct: 255 AAGNNEDSSDSGAAASDRPPASASSNEHEAESEHTST 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,080
Number of Sequences: 438
Number of extensions: 1410
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)