Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30801X
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02670.1 68418.m00203 expressed protein 27 2.9
At3g13100.1 68416.m01640 ABC transporter family protein similar ... 27 2.9
At1g22540.1 68414.m02815 proton-dependent oligopeptide transport... 26 5.0
At1g04440.1 68414.m00435 casein kinase, putative similar to case... 26 5.0
At4g32570.1 68417.m04636 expressed protein 26 6.7
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 26 6.7
At2g10175.1 68415.m01058 hypothetical protein 26 6.7
At1g76850.1 68414.m08943 expressed protein 26 6.7
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 26 6.7
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 25 8.8
At2g01700.1 68415.m00098 hypothetical protein 25 8.8
>At5g02670.1 68418.m00203 expressed protein
Length = 372
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 263 VLASSELPALGECGPWVAYGENGTAPRKAANTTSIPPATVDSKVRLANSS 114
VL +S+LP GEC N + R+ N I DS R++ +S
Sbjct: 246 VLKASQLPKNGECA-----SNNRSKKRRTRNAPDIESVETDSLCRISTAS 290
>At3g13100.1 68416.m01640 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1493
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 48 LGFHALVVRSSAGAILRLRCYSTAIRQSNFTVNCGRWDASSISSFTW 188
+G +++V L L CYS S +N DA IS+F+W
Sbjct: 377 IGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSW 423
>At1g22540.1 68414.m02815 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 557
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 26 NIRWALGVGISCVGRAV 76
N+ WALG GI C+ V
Sbjct: 212 NLSWALGFGIPCIAMVV 228
>At1g04440.1 68414.m00435 casein kinase, putative similar to casein
kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
contains protein kinase domain, Pfam:PF00069
Length = 468
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 108 SNASVKWRPRSTARPTHEIPTPKAHR 31
S++S +PR T RP IP P A +
Sbjct: 300 SSSSSNSKPRPTLRPAMNIPVPSADK 325
>At4g32570.1 68417.m04636 expressed protein
Length = 361
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 84 PRSTARPTHEIPTPKAHRIFT 22
P ARP+H+ + HRIFT
Sbjct: 310 PEFRARPSHQPTSSACHRIFT 330
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 48 LGFHALVVRSSAGAILRLRCYSTAIRQSNFTVNCGRWDASSISSFTW 188
LG +++V L L C+S S +N DA IS+F+W
Sbjct: 354 LGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSW 400
>At2g10175.1 68415.m01058 hypothetical protein
Length = 122
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 87 RPRSTARPTHEIPTPK 40
+PRSTAR H I TP+
Sbjct: 67 QPRSTARANHSIATPE 82
>At1g76850.1 68414.m08943 expressed protein
Length = 1090
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 277 GSGESCWLAVNYRHWANAARGSRTAKTAP 191
G CW VN A R R ++TAP
Sbjct: 129 GGEPDCWKRVNEAELARRVRDMRESRTAP 157
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 26 NIRWALGVGISCV 64
N+ WALG GI CV
Sbjct: 742 NVSWALGFGIPCV 754
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 49 WDFMRWSCGRARAPFYACV 105
WD SCG +P ACV
Sbjct: 300 WDIKNLSCGNMHSPTAACV 318
>At2g01700.1 68415.m00098 hypothetical protein
Length = 104
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 317 HVFAGMRCVIERVWKWRVVLASSELPALGECGPWVAYGENGTAPRKAA 174
++++G+RC ++ WK S + LG W NG +P A
Sbjct: 16 NIYSGLRCFVDGSWK-----GSDKFSGLG----WFCRSSNGDSPTMGA 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,563,855
Number of Sequences: 28952
Number of extensions: 107630
Number of successful extensions: 380
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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