Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30800X
(410 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 134 9e-31
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 59 3e-08
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 52 5e-06
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 45 7e-04
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 40 0.015
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 37 0.18
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 35 0.74
UniRef50_Q2NJP5 Cluster: Putative uncharacterized protein; n=1; ... 33 1.7
UniRef50_A0DUI7 Cluster: Chromosome undetermined scaffold_64, wh... 33 2.3
UniRef50_Q4DZX8 Cluster: Putative uncharacterized protein; n=2; ... 33 3.0
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 33 3.0
UniRef50_A4CD22 Cluster: Bifunctional protein; n=9; Gammaproteob... 32 4.0
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 32 4.0
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 32 5.2
UniRef50_A6R3V6 Cluster: Putative uncharacterized protein; n=1; ... 32 5.2
UniRef50_UPI0000DB6B7A Cluster: PREDICTED: similar to CG11098-PA... 31 6.9
UniRef50_Q8NBH2-2 Cluster: Isoform 2 of Q8NBH2 ; n=4; Amniota|Re... 31 6.9
UniRef50_Q54JA1 Cluster: Leucine-rich repeat-containing protein;... 31 6.9
UniRef50_Q6CIG3 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 31 9.1
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 134 bits (323), Expect = 9e-31
Identities = 63/69 (91%), Positives = 63/69 (91%)
Frame = +1
Query: 58 LTKKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGE 237
LTKKKST KPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEK KLTVVVKQI GE
Sbjct: 20 LTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGE 79
Query: 238 KNGGTRQYP 264
KNGGTR P
Sbjct: 80 KNGGTRTVP 88
Score = 52.4 bits (120), Expect = 3e-06
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3
Query: 246 GNQTVPLKRR*SFYPTQEKIRASSGGR 326
G +TVPLKRR SFYPTQEKIRASSGGR
Sbjct: 83 GTRTVPLKRRKSFYPTQEKIRASSGGR 109
Score = 43.6 bits (98), Expect = 0.002
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +2
Query: 329 FSNHVRRIRSGLVIGNVCILLDGRHA 406
FS HVRRIR L IG VCILL GRHA
Sbjct: 111 FSKHVRRIRPNLKIGTVCILLAGRHA 136
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 59.3 bits (137), Expect = 3e-08
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +1
Query: 85 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYP 264
P+N+ L GV FS+SKMFHK+ +K K ++ K V VK+++GEKNGG R P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 52.0 bits (119), Expect = 5e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +1
Query: 67 KKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNG 246
KK P N L G++R+SK++M+ ++A Y+ KK+P EK+ VK+I G KNG
Sbjct: 15 KKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNG 74
Query: 247 GTR 255
G R
Sbjct: 75 GER 77
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 44.8 bits (101), Expect = 7e-04
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +1
Query: 64 KKKSTIKP---RNYDLGNGVMRFSKSKMFHKKA----KYKFIGKKNPKPEKSNKLTVVVK 222
KK KP RN L G+ R+S+S M+ +KA KY K K +K L V K
Sbjct: 35 KKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTK 94
Query: 223 QIRGEKNGGTR 255
+ G+KNGGTR
Sbjct: 95 PVGGDKNGGTR 105
Score = 33.1 bits (72), Expect = 2.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 329 FSNHVRRIRSGLVIGNVCILLDGRH 403
FS HVR++R+ + G + I+L GRH
Sbjct: 133 FSQHVRKLRASITPGTILIILTGRH 157
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 40.3 bits (90), Expect = 0.015
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 88 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPS 267
RN +L G+ R+S+S ++ K+A YK K K ++ K I G+KNGG R P
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKR-KKTGVKKVVQDEPRTKTKDIGGDKNGGKRVVPV 69
Query: 268 NVGS---PSTPLRRK 303
S P+ +RR+
Sbjct: 70 QRESRYYPTEDVRRR 84
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 36.7 bits (81), Expect = 0.18
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 88 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGT 252
RN L G R+S ++ +K Y + K K +K + V+K + G+KNGGT
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGT 101
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 34.7 bits (76), Expect = 0.74
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +2
Query: 329 FSNHVRRIRSGLVIGNVCILLDGRH 403
FSNHVR+IRS + G V ILL G H
Sbjct: 80 FSNHVRKIRSSIQPGTVLILLAGPH 104
>UniRef50_Q2NJP5 Cluster: Putative uncharacterized protein; n=1;
Aster yellows witches'-broom phytoplasma AYWB|Rep:
Putative uncharacterized protein - Aster yellows
witches'-broom phytoplasma (strain AYWB)
Length = 57
Score = 33.5 bits (73), Expect = 1.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 64 KKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNK 204
KKK+ IK + ++ + + ++S F ++K K KKN KP + K
Sbjct: 9 KKKTKIKEKKNNMSDAMTEIARSTYFKDRSKLKSKTKKNNKPNQKEK 55
>UniRef50_A0DUI7 Cluster: Chromosome undetermined scaffold_64, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_64,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 397
Score = 33.1 bits (72), Expect = 2.3
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Frame = +1
Query: 115 MRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQI--RGEKNGGTRQYPSNVGSPST 288
++ K K+ K +YKF+G+KN K +K+ T + + K T SN G P
Sbjct: 148 VKAKKKKIQRMKMQYKFLGRKNNKVKKTRSKTQPLDPVIKMRHKRAQTEIKESNEG-PIF 206
Query: 289 PLR----RKSV----LHQVAVIQQSCAQDP 354
PL RK V + + AV +Q+C Q P
Sbjct: 207 PLENSLVRKIVKLIMMKKTAVKRQTCFQIP 236
>UniRef50_Q4DZX8 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 777
Score = 32.7 bits (71), Expect = 3.0
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +1
Query: 220 KQIRGEKNGGTRQYPSNVGSPSTPLRRKSVLHQVAVIQQSCAQDPIR 360
K++ + N G+ PS+V S+PLRR+S + V+V +++ D +R
Sbjct: 554 KRLMEQLNEGSSSLPSSVLPCSSPLRRQSTVPTVSVTERNVDWDDVR 600
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 32.7 bits (71), Expect = 3.0
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 64 KKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEK 240
K+ + RN+DL GV+RFS S++ KK G+K PK K + Q G K
Sbjct: 4 KRNLPVISRNFDLSPGVLRFSASRLRLKK------GEKKPKFTKDTSAKLPKLQRNGTK 56
>UniRef50_A4CD22 Cluster: Bifunctional protein; n=9;
Gammaproteobacteria|Rep: Bifunctional protein -
Pseudoalteromonas tunicata D2
Length = 392
Score = 32.3 bits (70), Expect = 4.0
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +1
Query: 112 VMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNVGSPSTP 291
V+ + ++ H +YK I P ++ +L ++ K I K+ G Y V +
Sbjct: 22 VLLAKRRRISHSVVEYK-ISNNKPIRDEQRELILLEKLIAYGKSLGLDSY--YVNNVFQT 78
Query: 292 LRRKSVLHQVAVIQQSCAQDPIRPGDR 372
+ SVLHQ A++QQS D + +R
Sbjct: 79 IIEDSVLHQQAMLQQSLNPDALNETNR 105
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 32.3 bits (70), Expect = 4.0
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 100 LGNGVMRFSKSKMFHK--KAKYKFIGK--KNPKPEKSNKLTVVVKQIRGEKNGGTR 255
L +G FSK++ K +AK + + K K K + K V+ K+I G+KNGGTR
Sbjct: 3 LASGKYVFSKAEAARKYLEAKRRQLPKSVKLAKKAQKKKPLVIEKKIGGDKNGGTR 58
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 31.9 bits (69), Expect = 5.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 329 FSNHVRRIRSGLVIGNVCILLDGRH 403
F++H RRIR + G V ILL GRH
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRH 110
>UniRef50_A6R3V6 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 1148
Score = 31.9 bits (69), Expect = 5.2
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 252 GSPILLTSNLLYNNSQLVGLLRLRVLFANELVFSLLVEHLGFGETHHSVA 103
G P++++ ++ N Q+VG+ L +L+ L +L + +G G+T +A
Sbjct: 568 GQPVIMSESITLKNYQIVGINWLNLLYQQNL-SCILADDMGLGKTCQVIA 616
>UniRef50_UPI0000DB6B7A Cluster: PREDICTED: similar to CG11098-PA,
isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar to
CG11098-PA, isoform A - Apis mellifera
Length = 1159
Score = 31.5 bits (68), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 243 WGNQTVPLKRR*SFYPTQ-EKIRASSGGRHSA 335
WG +++P R F+PTQ E++R G HS+
Sbjct: 1115 WGEESLPPPRNSGFHPTQRERVRNHKGSLHSS 1146
>UniRef50_Q8NBH2-2 Cluster: Isoform 2 of Q8NBH2 ; n=4; Amniota|Rep:
Isoform 2 of Q8NBH2 - Homo sapiens (Human)
Length = 369
Score = 31.5 bits (68), Expect = 6.9
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +1
Query: 100 LGNGVMRFSK--SKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTR-QYPSN 270
+GNGV R+ K FH + ++ P+ K ++ K+++G+KNG TR + P
Sbjct: 32 VGNGVRRWQKLEGNDFHGTQLTVEVHPRDAMPQLLKKFSLA-KRLQGDKNGNTRPRQPGG 90
Query: 271 VGSPSTPLRRKSV 309
+ + P R S+
Sbjct: 91 KDAHAYPWDRSSL 103
>UniRef50_Q54JA1 Cluster: Leucine-rich repeat-containing protein;
n=8; Eukaryota|Rep: Leucine-rich repeat-containing
protein - Dictyostelium discoideum AX4
Length = 3365
Score = 31.5 bits (68), Expect = 6.9
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
Frame = +1
Query: 175 KNPKPEKSNKL-----TVVVKQIRGEKNGGTRQYPSNVGS-----PSTPL 294
K PKP KS+KL ++ K ++ EKNG + SN+ + P+TPL
Sbjct: 168 KTPKPPKSSKLKHIYNSLKFKSLKTEKNGSSSSIKSNISNFEFIMPNTPL 217
>UniRef50_Q6CIG3 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome F of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 962
Score = 31.1 bits (67), Expect = 9.1
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 112 VMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNVGSPSTP 291
V+ S S M K ++ F N +++ T ++ + G R+ PSN+G STP
Sbjct: 93 VLDQSSSSMKKKPSRPSFSDPFNQG--SASRKTQSTSKVISSQGSGARRRPSNIGPHSTP 150
Query: 292 LRRKS 306
L R +
Sbjct: 151 LNRST 155
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,758,941
Number of Sequences: 1657284
Number of extensions: 8994699
Number of successful extensions: 22572
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22562
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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