Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30800X
         (410 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.7  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   4.7  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   6.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 55   WLTKKKSTIKPRNYDLGNGV 114
            W+T+ K   KP+ Y L   V
Sbjct: 1543 WVTELKQAFKPKGYLLSAAV 1562


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 172 KKNPKPEKSNKLTVVV 219
           KKNP P K  K+ + +
Sbjct: 107 KKNPYPTKGEKIMLAI 122


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 169 GKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNV 273
           G K+    K   LTV V  I GE  G      SNV
Sbjct: 159 GLKDAFAPKGYLLTVAVNSIPGEVGGYDIPAMSNV 193


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 70  KSTIKPRNYDLGNGVMRFS 126
           + T++  N D  NG ++FS
Sbjct: 113 QKTLQANNNDASNGNLKFS 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,251
Number of Sequences: 336
Number of extensions: 2172
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)