Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30800X
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    27   1.5  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.6  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   3.5  
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    25   4.6  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    25   6.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   6.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   6.1  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    24   8.0  

>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 311 STDFLLSGVEGLPTFEGYCLVP 246
           S   +L G EGL TF  +C+VP
Sbjct: 258 SIQIMLVGQEGLCTFVDFCIVP 279


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 258 LSGSPILLTSNLLYNNSQLVGLLRLRVLFANELVFSL 148
           LSGSP+L+T + + NN Q +   RL     NE V +L
Sbjct: 352 LSGSPVLVTLSFI-NNWQNLICRRLEKQTVNEKVITL 387


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 64  KKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNK-LTVVVKQIRGEK 240
           KKK    P    +GN  +   +S     K K K + +K  + E +NK L+ +V++I+ ++
Sbjct: 45  KKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELENANKTLSDLVRRIQIQR 104

Query: 241 N 243
           +
Sbjct: 105 D 105


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 121 FSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNVGSPSTPLRR 300
           FS S +  K    + I  K  +PEK+NK +V ++     +   TR +      P++ +R+
Sbjct: 14  FSSSSVMLKTLN-QTIRNKEKRPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRK 72


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 347 RIRSGLVIGNVCILLDGR 400
           ++R+ L  G VCILL GR
Sbjct: 47  KLRASLAPGTVCILLAGR 64


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = -3

Query: 252 GSPILLTSNLLYNNSQLVGLLRLRVLFANELVFSLLVEHLGFGETHHSVAQIIVPRFYRR 73
           GSP      L+   S +    +  +     +++++L  +L F +  H+     VPR Y R
Sbjct: 672 GSPCYAAPELVNCKSGMYAGTQADIWSCGVILYAMLAGYLPFDDDPHNPNGENVPRLY-R 730

Query: 72  FFLSQP 55
           +  S P
Sbjct: 731 YICSTP 736


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +1

Query: 37  CCSTCRWLTKKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNP 183
           CC    W T   S I P N  +   +  F    +    AKY F    NP
Sbjct: 373 CCECLAW-TSLFSNISPENLAIERKISTFLFGLLASSIAKYSFF-SNNP 419


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 145 KKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNVGSPSTPLRRKS 306
           K A+    G + P    +NK     K  +   N  ++Q   N    S P +RKS
Sbjct: 167 KAARAARFGIQQPLASSNNKNHNQSKNPQNRSNSRSKQRNKNAPPKSAPSKRKS 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,500
Number of Sequences: 5004
Number of extensions: 37000
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)