Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30800X
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    28   3.3  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    27   4.4  
03_05_0945 - 29070388-29072024,29072117-29072210                       27   5.8  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    27   7.7  

>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 64   KKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQ---IRG 234
            K+KS  K   +D+ N   +   S +   K +        P    ++KLT  +K+     G
Sbjct: 1203 KEKSHPKSNKHDMQNSKAQMLPSPLKESKVE----SHSAPLRSNASKLTAQLKRGNVENG 1258

Query: 235  EKNGGTRQYPSNVGSPSTPLRR 300
             ++G T+Q  SN    S+P+R+
Sbjct: 1259 GQHGITKQAISNPADTSSPVRK 1280


>01_06_0004 +
           25507739-25508206,25509346-25509477,25509910-25510086,
           25510175-25510219,25510305-25510512,25510766-25510825,
           25510826-25511016,25511219-25511614
          Length = 558

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 175 KNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNVGSPSTPL 294
           K+ +P  S   +++  + +G+K    RQ+ SN  SP  PL
Sbjct: 32  KHWRPRSSPSSSLLRNKGKGKKGSSNRQHGSNRPSPKPPL 71


>03_05_0945 - 29070388-29072024,29072117-29072210
          Length = 576

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 247 PHSSHLESALQQQSACWTS 191
           PH S L+  L  QSACW+S
Sbjct: 192 PHGSLLQLQLVGQSACWSS 210


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 67  KKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPE 192
           +  ++ PR  +L     +  K K+  K  K K + +  PKP+
Sbjct: 241 RPGSVPPREKELDGLAKKRLKRKVLRKSRKKKVLNENEPKPD 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,490
Number of Sequences: 37544
Number of extensions: 268853
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)