Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30800X
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    33   0.11 
AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical ...    30   0.75 
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    29   1.3  
U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z93785-4|CAB07860.1|  330|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81553-13|CAB04502.1|  345|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL009246-8|CAA15841.1|  345|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +1

Query: 64  KKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEK 240
           K+   +  RN+DL  GV+RFS S++  KK      G+K PK  K     +   Q  G K
Sbjct: 4   KRNLPVISRNFDLSPGVLRFSASRLRLKK------GEKKPKFTKDTSAKLPKLQRNGTK 56


>AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.14 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 22  SGGQACCSTCRWLTKKKSTIKPRNYDLGNGVMRFSKSKMFHKK 150
           SGGQ  C TCR +  K+   + +N+ L N V    K +   KK
Sbjct: 50  SGGQTQCPTCRAVVSKEK--RTKNFALTNAVTMIQKLREKPKK 90


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 261 VLSGSPILLTSNLLYNNSQLVGLLRLRVLFANELVFSLLVEHLGFGETHHSVAQIIVPRF 82
           V + +PIL       N +++V + R R +  N           G GE   +V QI  PR 
Sbjct: 224 VFNETPILQAHKSSGNFNEMVSMQRARTILPNRRT----ARRAGAGEHFQNVVQIETPRA 279

Query: 81  YRR 73
           Y R
Sbjct: 280 YHR 282


>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 151 AKYKFIGKKNPKPEKSNKLTVVVKQIR 231
           A+YK     NPKP KS K  V+++++R
Sbjct: 10  ARYKANAGVNPKPTKSQKGFVILQKLR 36


>Z93785-4|CAB07860.1|  330|Caenorhabditis elegans Hypothetical
           protein W09D10.4 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 229 RGEKNGGTRQYPSNVGSPSTPLRRKSVLHQVAVIQQSCAQDP 354
           RG  +G ++  PS+ GSPS+P     V + +A    SCA  P
Sbjct: 40  RGLSSGSSKPKPSSEGSPSSPAPSAHVENVIA----SCAGFP 77


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 136 MFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNVGSPSTP 291
           +F ++   KFI +    P    +L+    Q+   K+GGT   P NV   S P
Sbjct: 24  IFDRRLIVKFIAENGTDPISHGELSE--DQLVSLKSGGTGSAPRNVSGTSIP 73


>Z81553-13|CAB04502.1|  345|Caenorhabditis elegans Hypothetical
           protein C47F8.3 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 73  STIKPRNYDLGNG-VMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIR 231
           ST+ PRN D G+  ++ F+     HK  K+ ++ K      K + L +VV + +
Sbjct: 49  STLSPRNIDFGSSFIVSFAN---IHKSQKWIYLPKMKNVTWKHDILMLVVSKTK 99


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 28  GQACCSTCRWLTKKKSTIKPRNYDLGNGVMRFSKSKMFHKK 150
           G+ C  T  +     ST+ PR++D    V   S+  +F KK
Sbjct: 564 GKTCHETILYPISNDSTVIPRSWDSSTAVPILSEITIFGKK 604


>AL009246-8|CAA15841.1|  345|Caenorhabditis elegans Hypothetical
           protein C47F8.3 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 73  STIKPRNYDLGNG-VMRFSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIR 231
           ST+ PRN D G+  ++ F+     HK  K+ ++ K      K + L +VV + +
Sbjct: 49  STLSPRNIDFGSSFIVSFAN---IHKSQKWIYLPKMKNVTWKHDILMLVVSKTK 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,307,929
Number of Sequences: 27780
Number of extensions: 217826
Number of successful extensions: 498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)