Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30800X
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 217 VKQIRGEKNGGTRQYPSN 270
           V  +R EK+ G+R+YP++
Sbjct: 312 VSPLRREKDRGSREYPTS 329


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 58  LTKKKSTIKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNP---KPEKSNKLTVV 216
           +T  K  + PR YD  NG++    S+M    AK +   K  P    PE +  L  +
Sbjct: 272 VTTSKMMVSPRLYDRQNGLV---LSRMNLTLAKMEKTSKPLPMVDNPESTGNLVYI 324


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 308 TDFLLSGVEGLPTFEGYCLVPPFFSPRICFTT 213
           T FL++  E LP  E   L+  ++   IC  T
Sbjct: 256 TVFLMTIRESLPPTEKTPLISLYYGVSICLVT 287


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 48  LQVVD*EKIYDKT*EL*SGQRSDAFLQIQD 137
           L +VD  ++ D+T +L   + +DAF  +QD
Sbjct: 376 LAIVD--RLMDETNQLTLQETADAFKDLQD 403


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 259 YPSNVGSPSTPLRRKSVL--HQVAVIQQSCAQDPIRPGDRK 375
           YP  +G+PST +  K  L   Q ++  ++      +  DRK
Sbjct: 845 YPPVIGTPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRK 885


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,941
Number of Sequences: 438
Number of extensions: 2580
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)