Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30800X
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   0.53 
At5g65460.1 68418.m08232 kinesin motor protein-related contains ...    30   0.70 
At5g64090.1 68418.m08049 expressed protein                             27   4.9  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    27   4.9  
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative...    27   6.5  
At3g52250.1 68416.m05742 myb family transcription factor contain...    27   6.5  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 261 PLKRR*SFYPTQEKIRASSGGRHSA 335
           P++RR S  P +E++  S GGRH++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTS 549


>At5g65460.1 68418.m08232 kinesin motor protein-related contains
           similarity to kinesin heavy chain
          Length = 1281

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 172 KKNPKPEKSNKLTVVVKQIRGEKNGGTRQ 258
           K N KPEK +KL  VV +IRG      RQ
Sbjct: 858 KVNLKPEKKSKLVSVVSRIRGHDQDTGRQ 886


>At5g64090.1 68418.m08049 expressed protein 
          Length = 448

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +1

Query: 238 KNGGTRQYPSNVGSPSTPLRRKSVLHQVAVIQQSCAQDPIRPGDRKCLHS 387
           K  G    PS+  S STP R KSV    A         P    DR  +HS
Sbjct: 6   KPSGGSPSPSSSTSSSTPHRFKSVTTPTATAAAVSGFSPSAAADRDPMHS 55


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 172 KKNPKPEKSNKLTVVVKQIRG-EKNGGTRQ 258
           K N K E+ NKL  VV ++RG E++ G +Q
Sbjct: 858 KVNIKAERRNKLASVVSRMRGLEQDAGRQQ 887


>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
           microtubule-associated motor KIF4 , Mus musculus,
           PIR:A54803
          Length = 1294

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/69 (18%), Positives = 34/69 (49%)
 Frame = +1

Query: 121 FSKSKMFHKKAKYKFIGKKNPKPEKSNKLTVVVKQIRGEKNGGTRQYPSNVGSPSTPLRR 300
           +   K+     K K + ++  K E+++++T  +K++   +   +R+  S    P T    
Sbjct: 716 YEMHKLMALNQKQKLVLQR--KTEEASQVTKRLKELLDNRKASSRETLSGANGPGTQALM 773

Query: 301 KSVLHQVAV 327
           +++ H++ V
Sbjct: 774 QAIEHEIEV 782


>At3g52250.1 68416.m05742 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 22  SGGQACCSTCRWLTKKKSTIKPRNYDLGNGVMRFSKSKM 138
           SG    C+T   L+++ S+ K +    G G+ ++ K K+
Sbjct: 367 SGDATACATTTHLSEEMSSRKKQRLGWGEGLAKYEKKKV 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,860,629
Number of Sequences: 28952
Number of extensions: 203654
Number of successful extensions: 477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)