Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30798X
(313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 88 3e-19
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 85 2e-18
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 30 0.093
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 28 0.37
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.37
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 1.1
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi... 26 1.1
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 2.0
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 2.0
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 2.0
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 3.5
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 23 8.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 23 8.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 23 8.1
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 23 8.1
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 23 8.1
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 23 8.1
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 23 8.1
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 87.8 bits (208), Expect = 3e-19
Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 YKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQ 178
YK + V FG +T+FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+Q
Sbjct: 48 YKTDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQ 107
Query: 179 RKERKNRMKKVRGTKKSKVGAASKK 253
RK+RKNR KKV GT K SK+
Sbjct: 108 RKQRKNRGKKVFGTGKRLAKRKSKQ 132
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 85.0 bits (201), Expect = 2e-18
Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 YKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQ 178
YK V FG +T++GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+Q
Sbjct: 48 YKTDASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQ 107
Query: 179 RKERKNRMKKVRGTKKSKVGAASKK 253
RK+RKNR KKV GT K SK+
Sbjct: 108 RKQRKNRGKKVFGTGKRLAKRKSKQ 132
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 29.9 bits (64), Expect = 0.093
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 152 EKKRPTRKQRKERKNRMKKVRGTKKSKVGAASKK 253
EKK +Q++ +N +KK R +KKSK G A KK
Sbjct: 194 EKKAMLMRQQRREEN-LKKRRESKKSKKGKAPKK 226
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.9 bits (59), Expect = 0.37
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 98 DLAKKFEPKHRLARHGLYEKKRPTR--KQRKERKNRMKKVRGTKKSK 232
D KK + +L ++KR R + +K K+ +KKV GTKK K
Sbjct: 155 DKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKKVK 201
Score = 24.6 bits (51), Expect = 3.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 104 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 208
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.37
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 110 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 208
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 1.1
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 22 SVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQ-AQVSPPRPVREEEA 165
S R + +LRR + DLR +R G E RA+ A+ PR V E A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433
>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
Tom20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 26.2 bits (55), Expect = 1.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 155 KKRPTRKQRKERKNRMKKVRGTKKSKVGAASKKY 256
K+R RK K R KKV KK + A+KK+
Sbjct: 25 KRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKF 58
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 2.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 152 EKKRPTRKQRKERKNRMKKVRGTKKS 229
E+ +P ++ +E +NR+ ++RGT S
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGTPMS 115
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 2.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 155 KKRPTRKQRKERKNRMKKVRGTKKSK 232
+K+ +K++KE+K + +K KKS+
Sbjct: 449 RKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 158 KRPTRKQRKERKNRMKKVRGTKKSKVG 238
K PT+K ++E+K + K K+ VG
Sbjct: 1121 KAPTKKSQREKKKELSKQVPISKTNVG 1147
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 3.5
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 110 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 211
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 23.4 bits (48), Expect = 8.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 149 YEKKRPTRKQRKERKNRMKKVR 214
Y++K RKQR++ ++KK +
Sbjct: 478 YKRKAAERKQRRKELRQLKKTK 499
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 23.4 bits (48), Expect = 8.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 61 ATSEVCLETEYEHYIGSNL 5
A SE LE EYE +GS L
Sbjct: 1297 AASENILEIEYEDEVGSGL 1315
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 23.4 bits (48), Expect = 8.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 117 SNFLARSSVS*IKANPVDLPPP 52
SN+ A S V + N +DLPPP
Sbjct: 135 SNWRADSGVVQVIDNIIDLPPP 156
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 23.4 bits (48), Expect = 8.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 113 FEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGA 241
+E +A YE+ R + + K R K+R + KV A
Sbjct: 421 YEKARLIANPFSYEEHRQKIVKERLEKQRASKIRSQNRPKVNA 463
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 23.4 bits (48), Expect = 8.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 98 DLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 208
D A E K RL EKK ++Q+KE+K +K
Sbjct: 129 DEALLAERKQRLKEQR--EKKEQKKEQKKEKKTERRK 163
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.4 bits (48), Expect = 8.1
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 20 VVFVFGFKTNFGGGKSTGFALIYD-TLDLAKK 112
VV + NF G S G A +YD +D A K
Sbjct: 1465 VVILGSTGRNFAAGMSGGIAYVYDMQMDFAGK 1496
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 161 RPTRKQRKERKNRMKK 208
+P RK RK+ KNR K
Sbjct: 402 KPFRKSRKQSKNRKNK 417
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 26 FVFGFKTNFGGGKSTGFALI 85
F+FG TN+ G + G+A I
Sbjct: 232 FIFGDFTNYSGWSNMGWAFI 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,097
Number of Sequences: 5004
Number of extensions: 23624
Number of successful extensions: 96
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -