Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30798X
(313 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi... 113 2e-26
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ... 108 7e-25
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta... 30 0.38
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 0.50
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin... 27 2.0
At4g39170.1 68417.m05547 SEC14 cytosolic factor, putative / phos... 27 2.6
At2g21520.1 68415.m02561 SEC14 cytosolic factor, putative / phos... 27 2.6
At2g17972.1 68415.m02086 expressed protein 27 2.6
At4g35940.1 68417.m05113 expressed protein 27 3.5
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 27 3.5
At1g51010.1 68414.m05734 expressed protein 27 3.5
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 26 4.6
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P... 26 4.6
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 26 4.6
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 26 4.6
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 26 4.6
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 26 4.6
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 26 6.1
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 26 6.1
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 26 6.1
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa... 26 6.1
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 26 6.1
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 26 6.1
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 25 8.1
At4g40020.1 68417.m05666 hypothetical protein 25 8.1
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s... 25 8.1
At1g48350.1 68414.m05401 ribosomal protein L18 family protein si... 25 8.1
At1g48250.1 68414.m05388 hypothetical protein 25 8.1
>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
to ribosomal protein S19 GB:445612 [Solanum tuberosum]
and similar to ribosomal protein S24 GB:4506703 [Homo
sapiens]
Length = 133
Score = 113 bits (273), Expect = 2e-26
Identities = 52/80 (65%), Positives = 64/80 (80%)
Frame = +2
Query: 14 PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 193
P+ +FVF F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL K +RKQ KERK
Sbjct: 54 PNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERK 113
Query: 194 NRMKKVRGTKKSKVGAASKK 253
NR KK+RG KK+K G A KK
Sbjct: 114 NRAKKIRGVKKTKAGDAKKK 133
>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
ribosomal protein S19, Cyanophora paradoxa,
EMBL:CPA245654
Length = 133
Score = 108 bits (260), Expect = 7e-25
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +2
Query: 14 PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 193
P+ +F F F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +RKQ KERK
Sbjct: 54 PNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERK 113
Query: 194 NRMKKVRGTKKSKVGAASKK 253
NR KK+RG KK+K G KK
Sbjct: 114 NRAKKIRGVKKTKAGDTKKK 133
>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 598
Score = 29.9 bits (64), Expect = 0.38
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +2
Query: 152 EKKRPTRK-QRKERKNR-MKKVRGTKKSKVGAASKKY 256
EK+R +K +RKERK R MKK + TKK + + ++ Y
Sbjct: 62 EKERKRKKIERKERKRRDMKKKKKTKKREYESDTESY 98
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 0.50
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 17 DVVFVFGFKTNFGGGKSTGFALIYDT 94
DV FV GF T+F G GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 26 FVFGFKTNFGGGKSTGFALIYDT 94
FV GF T+F G TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132
>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 370
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 67 NWIRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRYQE 225
N F++++ S V A+ +V PP PVR +A + Q E P Y++
Sbjct: 202 NGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTYKQ 255
>At4g39170.1 68417.m05547 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and
phosphatidylinositol-phosphatidylcholine transfer
protein SEC14, Yarrowia lipolytica, PIR2:S43745;contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus
Length = 614
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 176 QRKERKNRMKKVRGTKKSKVGAASKKYVNA 265
++KERK+ + +++++G+ KK +NA
Sbjct: 21 EKKERKSDFENSEDERRTRIGSLKKKAINA 50
>At2g21520.1 68415.m02561 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to phosphatidylinositol
transfer-like protein IV (GI:14486707) [Lotus japonicus]
Length = 631
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 176 QRKERKNRMKKVRGTKKSKVGAASKKYVNA 265
++KERK+ + +++++G+ KK +NA
Sbjct: 25 EKKERKSDFENSEDERRTRIGSLKKKAINA 54
>At2g17972.1 68415.m02086 expressed protein
Length = 158
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 265 SIHILLGGRTYFRFLGTADLLHSVLT 188
SI+I++GG +FRF+G A L+ + T
Sbjct: 122 SIYIVIGGWIFFRFVGPAFNLYQLDT 147
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 152 EKKRPTRKQRKERKNRMKKVRGTKKSK-VGAASKKYVNAR 268
+K + +K+RKE+K + +K R ++ K VG+ + + R
Sbjct: 47 KKDKKDKKERKEKKEKKEKKRKEREGKEVGSEKRSHKRRR 86
>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
ribosomal protein L2 [Gossypium arboreum] GI:17933133;
contains Pfam profile PF00181: Ribosomal Proteins L2,
RNA binding domain
Length = 307
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 81 KANPVD-LPPPKFVLKPNTNTTSGV 10
K N ++ PP+ +L+P TNT SG+
Sbjct: 82 KMNTIEKFAPPRKILEPTTNTISGL 106
>At1g51010.1 68414.m05734 expressed protein
Length = 171
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 86 YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAS 247
+D ++ +K R+ LYEKK+ K++KE + +K +R + + VG S
Sbjct: 46 FDAIEEVRKKLNDKRMKLQELYEKKKEVMKEKKETPH-LKSLR-KQMANVGNTS 97
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 84 IKANPVDLPPPKFVLKPNTNTTSG 13
I+ PV PP F +P+TNT G
Sbjct: 347 IQPPPVSAPPVSFSHEPSTNTVHG 370
>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family
Length = 457
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 110 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKV 235
K +PK + R +K T+ ++KER+ KK KK+++
Sbjct: 398 KEDPKMKTPRGNNGSEKPSTQLEQKEREKSSKKKPQVKKTRI 439
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 182 KERKNRMKKVRGTKKSKVG 238
KERK R +++ G KK K+G
Sbjct: 222 KERKVREEEIEGVKKEKIG 240
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 98 DLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAASKK 253
++AKK E + + E+KR ++RK R+ +K +K + A ++
Sbjct: 528 EMAKKREEERQRKEREEVERKRREEQERKRREEEARKREEERKREEEMAKRR 579
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 89 DTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 232
D LD+ K HR R+ + + KQ++E K +M+K + K++
Sbjct: 550 DDLDVVKS---NHRARRNSSMAAECSSLKQKQENKKKMQKYKDMLKTR 594
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 116 EPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVG 238
+PKH L + KK+ T + K NR+K + K G
Sbjct: 13 KPKHSLDANRADGKKKTTETRSKSTVNRLKMYKTRPKRNAG 53
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 99 SSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLY 1
S ++ ++ V L PP + +PN + SG +L+
Sbjct: 90 SQLNQVQVQHVPLGPPTLISQPNVSIASGTSLH 122
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 155 KKRPTRKQRKERKNRMKK 208
KKRPTR++R+ K+ KK
Sbjct: 564 KKRPTREERERNKSNGKK 581
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 131 LARHGLYEKK-RPTRKQRKERKNRMKKVRGTKKSKVGAASK 250
+A+ G KK + +K+RKERK R + ++ K+ K
Sbjct: 1 MAKEGEERKKEKKEKKERKERKRREAEELAVREKKISKKHK 41
>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
profile: PF04096 nucleoporin autopeptidase
Length = 1046
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 277 SLIPSIHILLGGRTYFRFLGTADLLHSVLTFFTLFARGPLLLVQAVAG*PVLG 119
S +P I G Y RFLG D+ L F R +++ + PV+G
Sbjct: 75 SRVPDFTIGRIGYGYIRFLGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVG 127
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 152 EKKRPTRKQRKERKNRMKKVRGTKKSKVG 238
+KK+ RK +N + + TKKSK G
Sbjct: 472 KKKKEKRKMETAEENEKSEKKKTKKSKAG 500
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 152 EKKRPTRKQRKERKNRMKKVRGTKKSK 232
EK++ K+R+E++ +K +G ++SK
Sbjct: 816 EKRKDKDKERREKEREREKEKGKERSK 842
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 173 KQRKERKNRMKKVRGTKKSKVGAASKK 253
K+RKE+KN+ +K+ +K+ K G KK
Sbjct: 612 KERKEKKNK-EKLAKSKEDKRGKKDKK 637
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 152 EKKRPTRKQRKERKNRMKKVRGTKKSKVGAASKK 253
EKK +++++E+K K+ + +KK K + KK
Sbjct: 395 EKKIEEKEKKEEKKENKKEKKESKKEKKEHSEKK 428
>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
subunit, putative similar to Toc64 [Pisum sativum]
GI:7453538; contains Pfam profile PF00515 TPR Domain
Length = 589
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 VFGFKTNFGGGKSTGFALIYDTLDLAKKF-EPKHRLARHGLYEKKRPTRKQRKERK 193
V GFK+++G +TG + +LD F + L R G + P QR R+
Sbjct: 177 VLGFKSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQ 232
>At1g48350.1 68414.m05401 ribosomal protein L18 family protein
similar to ribosomal protein L18 GI:3980238 from
[Thermotoga maritima]
Length = 170
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 167 WASSSRTGRGGLTCAWARTSWPDRVCRRSK 78
W+SSS R + A +TS DR+ R S+
Sbjct: 34 WSSSSLQSRSMVVEAKTKTSSEDRIARHSR 63
>At1g48250.1 68414.m05388 hypothetical protein
Length = 354
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 91 HTRSGQEVRAQAQVSPPRPVREEE 162
H SG EVRA + S R +R+EE
Sbjct: 202 HIESGVEVRAPLRRSKRRRIRDEE 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,598,206
Number of Sequences: 28952
Number of extensions: 128069
Number of successful extensions: 492
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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