Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30796
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15091| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           29   3.2  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   7.5  
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)                 28   7.5  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 28   7.5  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   9.9  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_15091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 5/48 (10%)
 Frame = -1

Query: 784 RLLRSG----IGLSMFN-TTPWNVSAAMRRNEFTRDRGTFVNSTSHIQ 656
           R+LRSG    + +S++N TTPWN++A ++    T D+G  V ++++ Q
Sbjct: 9   RVLRSGHATKLSVSLYNVTTPWNITAVLQ----TTDKGEEVIASTNKQ 52


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 767  YWAFHVQYHPMERKRSHEKERVYQGSWHLREQHEPH 660
            YWA  V Y       +  KE  Y  +W   ++HE H
Sbjct: 939  YWAISVLYSKYATHVAFNKEHSYPAAWINEKEHERH 974


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 282 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 434
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
          Length = 1083

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 663 WLVLFTKVPRSLVNSFLLMAALTFHGVVLNMESPIP 770
           WLV +T   + L+N+ L+M  L+ +  V+    P P
Sbjct: 761 WLVNYTGEGKDLLNNALVMGTLSVYNTVITQLLPTP 796


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 785 PPTKIWYWAFHVQYHPMERKRSHEKERVYQGSWHLREQHEPHTGA 651
           PP  I+ W +    +PMER R     R +Q   H   +H+    A
Sbjct: 785 PPQNIYPWQYPGAVNPMERPRPMSNLRHHQHGAHHGLKHDTENDA 829


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 274 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 402
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 506 SCYRCSRWH--FDFPGACGTPACADSDVVNWERFGIRPGYEW 387
           +C+ C + H  FD  GAC T  C +  + + E F + PGY W
Sbjct: 345 ACF-CRKNHHRFDRFGACFT--CPNGMICSNETFTLAPGYYW 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,338,732
Number of Sequences: 59808
Number of extensions: 547440
Number of successful extensions: 1665
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)