Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30796
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical...    30   1.6  
Z48045-2|CAA88100.2|  967|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF435952-1|AAL30828.1|  967|Caenorhabditis elegans Ser/Thr prote...    29   3.8  
AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (...    29   3.8  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    29   3.8  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    29   3.8  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   6.6  
Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical pr...    25   7.7  
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39B6A.39 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
 Frame = +1

Query: 124 SSGSVQFKVRAANDAHIALTTGP---QESDPMYEVMIGGWGNAKSVIGKIEPSPIRLKL- 291
           ++G  ++K R+  D    LT  P   +E DP  +     W  A++    + P P+R+   
Sbjct: 70  ATGRTEYKTRSRFDLMDRLTKRPPRSEEMDPEAQKWCDVWPAARTFASSVVPLPVRMGTR 129

Query: 292 ----KAPEFLTEGNIVVFGFVGIAALSP 363
               K   F  EGN+ +        L+P
Sbjct: 130 PNVEKRAPFKKEGNLELVKIPNFLHLTP 157


>Z48045-2|CAA88100.2|  967|Caenorhabditis elegans Hypothetical
           protein C41C4.4 protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
 Frame = -3

Query: 614 EVLDLLKHQPIYRLLQT--EGVRFLRS-LQGSQGVLRTSSCYRCSRWHFDFPGACGTPAC 444
           E+   L+ +P+ R      +G  FL + L GS  VL+ SS  +     F+ P       C
Sbjct: 63  EIKWTLQEEPVLRSPSAVKQGFTFLPNPLDGSLYVLKNSSLKKLP---FNIPQLVHASPC 119

Query: 443 ADSDVVNWER------FGIRPGYEWNSFTLASSGDNAAIPTNPKTTIF 318
             +D + +        FGI P       TL+S+  +   P N K TIF
Sbjct: 120 KGNDGILYAGSKKDVWFGIDPKTGLKVETLSSASADRICPANQKQTIF 167


>AF435952-1|AAL30828.1|  967|Caenorhabditis elegans Ser/Thr protein
           kinase protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
 Frame = -3

Query: 614 EVLDLLKHQPIYRLLQT--EGVRFLRS-LQGSQGVLRTSSCYRCSRWHFDFPGACGTPAC 444
           E+   L+ +P+ R      +G  FL + L GS  VL+ SS  +     F+ P       C
Sbjct: 63  EIKWTLQEEPVLRSPSAVKQGFTFLPNPLDGSLYVLKNSSLKKLP---FNIPQLVHASPC 119

Query: 443 ADSDVVNWER------FGIRPGYEWNSFTLASSGDNAAIPTNPKTTIF 318
             +D + +        FGI P       TL+S+  +   P N K TIF
Sbjct: 120 KGNDGILYAGSKKDVWFGIDPKTGLKVETLSSASADRICPANQKQTIF 167


>AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (grd
           related) protein18 protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 341 TNPKTTIFPSVKNSGAFNFNLIGLGSIFPMTLLAFPQPPIITS 213
           T P + I+PS +N      +   L +I P  + ++PQPP+ T+
Sbjct: 66  TQPPSVIYPSYQNQQPLQPSSSYLANIPPF-MQSYPQPPLFTT 107


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 669 VLFTKVPRSLVNSFLLMAALTFHGVVL 749
           ++FT +  S+VNS+L+ + LT  G++L
Sbjct: 94  IIFTVISTSVVNSWLIFSILTITGLIL 120


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 669 VLFTKVPRSLVNSFLLMAALTFHGVVL 749
           ++FT +  S+VNS+L+ + LT  G++L
Sbjct: 94  IIFTVISTSVVNSWLIFSILTITGLIL 120


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 421 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 314
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical
           protein F36D3.9 protein.
          Length = 344

 Score = 24.6 bits (51), Expect(2) = 7.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 610 TSWRRCGRTGLLRRAPVCGSC 672
           T W +C    L+R    CGSC
Sbjct: 109 TRWPQCKSMKLIREQSNCGSC 129



 Score = 21.8 bits (44), Expect(2) = 7.7
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +1

Query: 661 CGSCCSRRCHDPW*TRSFSWLRLRSM 738
           CG  C   C   +  R+F W   R +
Sbjct: 163 CGMSCGEGCDGGFPYRAFQWWARRGV 188


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 125 ETGKNWY*RLSSVATSMTLAMIVV 54
           ET + WY +LSS +T+M +A++ V
Sbjct: 15  ETFEKWYLKLSSTSTAMLIAILFV 38


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 752 VQYHPMERKRSHEKERVYQGSWHLREQH-EPHTGALLSSPVLPQRRQEVLDLLK 594
           VQ+  +E     E    YQ    LRE + + H    L  P L QRRQE+LD ++
Sbjct: 292 VQFENLEHIIGEEHHAEYQ---QLREDYRQAHVD--LIGPELEQRRQEILDRMR 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,522,644
Number of Sequences: 27780
Number of extensions: 393163
Number of successful extensions: 1199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)