Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30795
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 94 2e-20
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 49 6e-07
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 41 2e-04
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.6
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 6.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.0
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 8.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 8.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 8.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 8.0
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/64 (64%), Positives = 52/64 (81%)
Frame = -1
Query: 705 PKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGL 526
P++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +
Sbjct: 31 PRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQV 90
Query: 525 FKIL 514
FK+L
Sbjct: 91 FKLL 94
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = -3
Query: 418 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVK 257
+P ++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK
Sbjct: 128 KPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVK 181
Score = 46.4 bits (105), Expect = 4e-06
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = -2
Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
+ K+RLG ++H+KT LA+T V D+ + +V A+ NF+ +Y++
Sbjct: 181 KNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDE 228
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 49.2 bits (112), Expect = 6e-07
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = -3
Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSPA 245
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V A
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAA 85
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 269
I G V K V K + LV++A D+ P++++ +P LC VPY
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 105 SACGVLVALVEVRLDGFHDLREGGAVTRL 191
+A ++ L++ ++DGFHD+ +G RL
Sbjct: 305 NATNTILQLLDSKVDGFHDIFDGRLFIRL 333
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 612 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 511
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 385 LCLCRIGWC 411
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 628 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 539
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 508 ILQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 612
+L+N ++ L +L + L +V++ H TTL Y+L
Sbjct: 1689 LLKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 691 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 536
++ + N + Q+ A YP+ + SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 403 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 281
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 434 IFLGNLSFSSFPQPLFPGCFSLRPVFSKILKRPLAVVLSSVWVNWLIGGGTFRR 595
IFL + P PL +P+ S ++ L ++ + VW++W G +F R
Sbjct: 263 IFLAQYTSIPLPCPLQLPSPDQKPMTSFSSEQMLYIMYNIVWISWNCGIFSFPR 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,325
Number of Sequences: 5004
Number of extensions: 46633
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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