Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30795
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   7e-21
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        92   3e-19
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        51   1e-06
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          44   2e-04
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               31   0.69 
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   6.4  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 42/64 (65%), Positives = 53/64 (82%)
 Frame = -1

Query: 705 PKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGL 526
           P+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   L
Sbjct: 36  PRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQL 95

Query: 525 FKIL 514
           FK+L
Sbjct: 96  FKLL 99



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 47/91 (51%), Positives = 56/91 (61%)
 Frame = -3

Query: 526 FQDFGEYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLV 347
           F+   +YRPET                        K+P  ++ G N +T LVE KKAQLV
Sbjct: 96  FKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLV 155

Query: 346 VIAHDVDPIELVLFLPALCRKMGVPYCIVKG 254
           VIAHDVDPIE+V++LPALCRKM VPYCIVKG
Sbjct: 156 VIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 186



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 21/48 (43%), Positives = 36/48 (75%)
 Frame = -2

Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
           +GK+RLG +VH+K  T L +T V   D+ S + ++E++KTN+NER+++
Sbjct: 185 KGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDE 232



 Score = 31.1 bits (67), Expect = 0.91
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 117 LRKHWGGGVLGNKS 76
           +RKHWGGG++G KS
Sbjct: 233 IRKHWGGGIMGPKS 246


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 47/91 (51%), Positives = 56/91 (61%)
 Frame = -3

Query: 526 FQDFGEYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLV 347
           F+   +YRPET                        K+P  ++ G N +T LVE KKAQLV
Sbjct: 5   FKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLV 64

Query: 346 VIAHDVDPIELVLFLPALCRKMGVPYCIVKG 254
           VIAHDVDPIE+V++LPALCRKM VPYCIVKG
Sbjct: 65  VIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 95



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 21/48 (43%), Positives = 36/48 (75%)
 Frame = -2

Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
           +GK+RLG +VH+K  T L +T V   D+ S + ++E++KTN+NER+++
Sbjct: 94  KGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDE 141



 Score = 31.1 bits (67), Expect = 0.91
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 117 LRKHWGGGVLGNKS 76
           +RKHWGGG++G KS
Sbjct: 142 IRKHWGGGIMGPKS 155


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = -3

Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSPA 245
           +R G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+   A
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAA 147


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 418 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 260
           +  T+R G   V K + K +   V++A DV PI+++  +P +C    +PY  V
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYV 147


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 397 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGS 251
           G +   K ++K++A L +++++ D    V  + ALC + G+P   V  S
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDS 89


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 272  ILHCQGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
            ++  +GK+ LG    +KT   L +  V    R S S VVEA  ++  E+Y D
Sbjct: 1089 VIRVKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSD 1136


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 416 PLWWRLIFLGNLSFSSFPQPLFPG 487
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 604 TSASSESAPSDQPIYPDTG 548
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,928,216
Number of Sequences: 59808
Number of extensions: 388472
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)