Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30795
         (705 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   106   8e-25
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   1.8  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  106 bits (254), Expect = 8e-25
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = -1

Query: 702 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 523
           KN+ IGQ +QP RDLSRFV+WPKYIRIQR +A+LQ+RLK+PPPINQFTQTLDK TA+ + 
Sbjct: 43  KNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLDKPTAQQVM 102

Query: 522 K 520
           K
Sbjct: 103 K 103



 Score = 97.9 bits (233), Expect = 3e-22
 Identities = 42/55 (76%), Positives = 50/55 (90%)
 Frame = -3

Query: 418 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 254
           R N +R G N+V K+VE+KKAQLV+IAHDVDPIELV++LPALCRKMGVPYCI+KG
Sbjct: 138 RANQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKG 192



 Score = 72.1 bits (169), Expect = 2e-14
 Identities = 29/48 (60%), Positives = 41/48 (85%)
 Frame = -2

Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
           +GK+RLG LV+RKTCTC+ALT  E+ D+ + +K+VE IKTNFN+R++D
Sbjct: 191 KGKARLGTLVYRKTCTCVALTQFENADKPNLAKLVETIKTNFNDRFDD 238



 Score = 29.9 bits (64), Expect = 0.082
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 117 LRKHWGGGVLGNKS 76
           +R+HWGGG+LG KS
Sbjct: 239 IRRHWGGGLLGPKS 252


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 410  HHPIRHKHSHQAGREEEGAACGHRS*C*SH*AGSLPASVMP 288
            HH + H H H  G   EG   G  +   S  AG L A V P
Sbjct: 1315 HHHLHHGHHHHHG--GEGVPMGPANAAPSSPAGVLVAKVPP 1353


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,374
Number of Sequences: 2352
Number of extensions: 14082
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)