Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30795
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    94   8e-20
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    94   8e-20
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    94   1e-19
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    85   4e-17
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    49   3e-06
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    37   0.016
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine r...    28   7.5  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 40/64 (62%), Positives = 52/64 (81%)
 Frame = -1

Query: 702 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 523
           +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  F
Sbjct: 38  RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAF 97

Query: 522 KILE 511
           K+L+
Sbjct: 98  KLLD 101



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 44/91 (48%), Positives = 57/91 (62%)
 Frame = -3

Query: 526 FQDFGEYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLV 347
           F+   +YRPE+                        KRPNT+R G NT+T+LVE ++AQLV
Sbjct: 97  FKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLV 156

Query: 346 VIAHDVDPIELVLFLPALCRKMGVPYCIVKG 254
           +IAHDV+P+E+VL LPALCRK  VPY I+KG
Sbjct: 157 LIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 187



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = -2

Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
           +GK+ LG +V RKT   +AL +V   D+++ +K+VE +  NF+ER+E+
Sbjct: 186 KGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEE 233



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 117 LRKHWGGGVLGNKSN 73
           +RKHWGGGV+  KS+
Sbjct: 234 IRKHWGGGVMSAKSD 248


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 40/64 (62%), Positives = 52/64 (81%)
 Frame = -1

Query: 702 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 523
           +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  F
Sbjct: 38  RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAF 97

Query: 522 KILE 511
           K+L+
Sbjct: 98  KLLD 101



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 38/55 (69%), Positives = 48/55 (87%)
 Frame = -3

Query: 418 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG 254
           RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KG
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 167



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = -2

Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
           +GK+ LG +V RKT   +AL +V   D+++ +K+VE +  NF+ER+E+
Sbjct: 166 KGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEE 213



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 117 LRKHWGGGVLGNKSN 73
           +RKHWGGGV+  KS+
Sbjct: 214 IRKHWGGGVMSAKSD 228


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/64 (62%), Positives = 52/64 (81%)
 Frame = -1

Query: 702 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 523
           +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  F
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAF 200

Query: 522 KILE 511
           K+L+
Sbjct: 201 KLLD 204


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 36/52 (69%), Positives = 44/52 (84%)
 Frame = -1

Query: 702 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 547
           +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = -3

Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSPA 245
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+   A
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAA 88


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -3

Query: 409 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 260
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYI 117


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 578 LRSTNLPRHWTRLQLRA 528
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein20 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 331 VDPIELVLFLPALCRKMGVPYCIVKGSPASV 239
           +DP+ ++L LPAL R++  P    +G+  SV
Sbjct: 294 LDPLAIILLLPALRRRLPNPIRKYRGNSVSV 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,702
Number of Sequences: 27780
Number of extensions: 282784
Number of successful extensions: 858
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)