Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30795
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    94   9e-20
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            93   1e-19
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    44   1e-04
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    44   1e-04
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    44   1e-04
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    43   2e-04
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    38   0.005
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    34   0.080
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    34   0.080
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)            33   0.24 
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)            33   0.24 
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)            33   0.24 
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    29   2.3  
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.0  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    29   3.0  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 40/64 (62%), Positives = 51/64 (79%)
 Frame = -1

Query: 705 PKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGL 526
           PK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  L
Sbjct: 27  PKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSL 86

Query: 525 FKIL 514
           FKIL
Sbjct: 87  FKIL 90



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 45/68 (66%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
 Frame = -3

Query: 418 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSP--- 248
           +P  ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKG     
Sbjct: 122 KPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181

Query: 247 ASVHLYTA 224
           A VH  TA
Sbjct: 182 AVVHQKTA 189



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = -2

Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
           +GKSRLGA+VH+KT   L LT V++ D+  FSK++EAIK NFN++YE+
Sbjct: 175 KGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEE 222



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 114 RKHWGGGVLGNKS 76
           RK WGGG++G+KS
Sbjct: 224 RKKWGGGIMGSKS 236


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 39/64 (60%), Positives = 51/64 (79%)
 Frame = -1

Query: 705 PKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGL 526
           PK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  L
Sbjct: 28  PKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSL 87

Query: 525 FKIL 514
           FK+L
Sbjct: 88  FKVL 91



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 45/68 (66%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
 Frame = -3

Query: 418 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSP--- 248
           +P  ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKG     
Sbjct: 123 KPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182

Query: 247 ASVHLYTA 224
           A VH  TA
Sbjct: 183 AVVHQKTA 190



 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 29/48 (60%), Positives = 41/48 (85%)
 Frame = -2

Query: 260 QGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYED 117
           +GKSRLGA+VH+KT +CL LT V++ D+  FSK++EAIK NFN++YE+
Sbjct: 176 KGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEE 223



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 114 RKHWGGGVLGNKS 76
           RK WGGG++G+KS
Sbjct: 225 RKKWGGGIMGSKS 237


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = -3

Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSPA 245
           ++ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V    A
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 88


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = -3

Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSPA 245
           ++ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V    A
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 88


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -3

Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSPA 245
           ++ G N  TK + +  ++ +V+A D +P+E++L LP L     VPY  V    A
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 88


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -3

Query: 406 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 260
           ++ G   V K + + +  L VIA ++ PI+++  LP LC + GVPY  V
Sbjct: 51  LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYV 99


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 388 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGSPA 245
           + TK + +  ++ VV+A D +P+E++L LP L     VPY  V    A
Sbjct: 73  SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 397 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 290
           G +   KL+EK+ AQLVV+A D +  + V  + ALC
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 397 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 290
           G +   KL+EK+ AQLVV+A D +  + V  + ALC
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82


>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 397 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 290
           G +   KL+EK+ AQL V+A D +  + V  + ALC
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82


>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 397 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 290
           G +   KL+EK+ AQL V+A D +  + V  + ALC
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82


>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 397 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 290
           G +   KL+EK+ AQL V+A D +  + V  + ALC
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 610 GCTSASSESAPSDQPIYPDTGQDYS*GPFQDFGEYRPE 497
           GC +ASS S+ S+      TG D++   FQ + EY  E
Sbjct: 154 GCDTASSGSSDSEGKFGFQTGPDFTLEEFQKYDEYFKE 191


>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 252 VPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGLRKHWGGGV 91
           VP  CT    D H+ +     VW   +LLE     + E+++ LR +    G G+
Sbjct: 365 VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKGDGL 418


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 440 LGNLSFSSFPQPLFPGCFSLRPVFSK 517
           L N S S  P+P+FPGC  +R + +K
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNK 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,578
Number of Sequences: 28952
Number of extensions: 273403
Number of successful extensions: 884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)