Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30793
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 125 3e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 125 4e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 123 2e-28
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 3.8
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.7
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 28 6.7
08_02_0610 + 19307537-19308011,19308187-19310846 28 8.8
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.8
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 28 8.8
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 125 bits (302), Expect = 3e-29
Identities = 56/94 (59%), Positives = 74/94 (78%)
Frame = +3
Query: 222 KVFPQIQINRRYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 401
+ + +I++ VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 402 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 503
CIGFT + ++TCYAQ +Q+R IR+KM EI+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM 172
Score = 106 bits (254), Expect = 2e-23
Identities = 54/94 (57%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Frame = +1
Query: 43 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 222
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 223 RSFRKFRLIAD--MCKDVMCSATSTAWTSQPISS 318
+++RK RL A+ K+V+ + ++T+ + S
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRS 112
Score = 73.7 bits (173), Expect = 1e-13
Identities = 30/58 (51%), Positives = 48/58 (82%)
Frame = +2
Query: 515 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGE 688
++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+HG+
Sbjct: 177 SSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 125 bits (301), Expect = 4e-29
Identities = 56/100 (56%), Positives = 75/100 (75%)
Frame = +3
Query: 222 KVFPQIQINRRYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 401
+ + ++++ VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 402 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRTSLT 521
CIGFT + ++TCYAQ +Q+R IR+KM EI+ + T
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAST 178
Score = 105 bits (251), Expect = 5e-23
Identities = 50/71 (70%), Positives = 61/71 (85%)
Frame = +1
Query: 43 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 222
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 223 RSFRKFRLIAD 255
+++RK RL A+
Sbjct: 79 QAYRKVRLRAE 89
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/63 (50%), Positives = 49/63 (77%)
Frame = +2
Query: 524 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEAVEAR 703
+L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++ KLME+HG+ E
Sbjct: 180 DLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDV 239
Query: 704 GSR 712
G +
Sbjct: 240 GMK 242
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 123 bits (296), Expect = 2e-28
Identities = 55/94 (58%), Positives = 73/94 (77%)
Frame = +3
Query: 222 KVFPQIQINRRYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 401
+ + +I++ VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 402 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 503
CIGFT + ++TCYAQ +Q+R IR+KM EI+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM 172
Score = 106 bits (255), Expect = 2e-23
Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Frame = +1
Query: 43 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 222
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 223 RSFRKFRLIAD--MCKDVMCSATSTAWTSQPISS 318
+++RK RL A+ K+V+ + ++T+ + S
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRS 112
Score = 75.8 bits (178), Expect = 3e-14
Identities = 32/66 (48%), Positives = 52/66 (78%)
Frame = +2
Query: 515 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEAV 694
++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+HG+
Sbjct: 177 SSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYK 236
Query: 695 EARGSR 712
E G++
Sbjct: 237 EDVGTK 242
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 533 EVVNKLIPDSIAKDIEKACHGIYPLRD 613
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 277 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 366
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 704 PLPPPLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHG 588
PLPPP + + A+ST + GC ++ G G
Sbjct: 263 PLPPPSAPASAVRGKGKRAATSTAASEGCSKKSRGNSAG 301
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +1
Query: 169 GRVFEVSLA--DLQADTDAERSFRKFRLIADMC 261
G VF VSL +LQA+T +E++ + L+AD C
Sbjct: 334 GMVFNVSLGLLNLQAETKSEKTKQYSLLLADTC 366
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 186 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 94
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/58 (25%), Positives = 22/58 (37%)
Frame = -2
Query: 704 PLPPPLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 531
P+P P+ R PSTSRS S G C + ++ + + P P
Sbjct: 11 PVPSPILRHSPSTSRSLRSVGDMPSVTFAGDMRSGSCRAESTASSFESFRRAGSRPQP 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,034,716
Number of Sequences: 37544
Number of extensions: 469840
Number of successful extensions: 1629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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