Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30793
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi... 126 2e-29
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB) 125 3e-29
At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 30 1.4
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 30 1.4
At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At5g42470.1 68418.m05170 expressed protein low similarity to BRE... 28 5.6
At3g22150.1 68416.m02796 pentatricopeptide (PPR) repeat-containi... 28 7.4
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 28 7.4
>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
to 40S ribosomal protein S3A (S phase specific protein
GBIS289) GB:P49396 [Brassica rapa]
Length = 262
Score = 126 bits (304), Expect = 2e-29
Identities = 56/94 (59%), Positives = 73/94 (77%)
Frame = +3
Query: 228 FPQIQINRRYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 407
+ +I++ VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI
Sbjct: 81 YRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCI 140
Query: 408 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 509
FT + + ++TCYAQ +Q+R IR+KM +I+ R
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVR 174
Score = 109 bits (262), Expect = 2e-24
Identities = 56/94 (59%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
Frame = +1
Query: 43 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 222
VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED-- 78
Query: 223 RSFRKFRLIAD--MCKDVMCSATSTAWTSQPISS 318
++RK RL A+ ++V+C +T+ + S
Sbjct: 79 NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRS 112
Score = 75.8 bits (178), Expect = 3e-14
Identities = 30/60 (50%), Positives = 50/60 (83%)
Frame = +2
Query: 509 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGE 688
+ ++ +L+++V K IP++I ++IEKA GIYPL++V IRKVK+LK P+F++ KLM++HG+
Sbjct: 175 EASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGD 234
>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
Length = 262
Score = 125 bits (302), Expect = 3e-29
Identities = 56/94 (59%), Positives = 73/94 (77%)
Frame = +3
Query: 228 FPQIQINRRYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 407
+ +I++ VQGRNVL F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI
Sbjct: 81 YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 140
Query: 408 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITR 509
FT + + ++TCYAQ +Q+R IR+KM EI+ +
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVK 174
Score = 104 bits (249), Expect = 7e-23
Identities = 51/71 (71%), Positives = 58/71 (81%)
Frame = +1
Query: 43 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 222
VDPF++KDWYDVKAP F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 223 RSFRKFRLIAD 255
++RK RL A+
Sbjct: 79 NAYRKIRLRAE 89
Score = 78.2 bits (184), Expect = 5e-15
Identities = 32/60 (53%), Positives = 50/60 (83%)
Frame = +2
Query: 509 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGE 688
+ ++ +L+E+V K IP++I ++IEKA GIYPL++V IRKVK+LK P+F++ KLME+HG+
Sbjct: 175 EASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 676
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -2
Query: 503 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 339
N F H L D S+++ V A +A+ + I ++ +DT N ++G +H+N F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 350 DESLPFFNHPPELIGCEVHAVEV-AEHITSLHISAINLNLRKDLSASVS 207
D+ +P FN PP+++ C V +V + AEH T + I L +D S S
Sbjct: 61 DQEIPVFNLPPKIL-CRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTS 108
>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); similar to GI:4928397
from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
579-590 (1999))
Length = 413
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/93 (22%), Positives = 33/93 (35%)
Frame = -2
Query: 695 PPLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP*VQS* 516
P L E T NG + P+ C + P PW S + + P P + +
Sbjct: 11 PTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTIS-PQLPPWSSSPQPSPCPSPSISAV 69
Query: 515 *RPCNDFTHFLSDCSDLSVLGVARLALAQGVLI 417
P D + L S +++ G L G +
Sbjct: 70 YLPSQDSSSSLDAISIITITGAVLAILLTGFFL 102
>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
alpha b isoform [Homo sapiens] GI:16326573
Length = 382
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 335 FFNHPPELIGCEVHAVEVAEHITSLHISAINLNLRKDLSASVSACRSA 192
+ H E + ++H A + I A++LNL + L A + CR A
Sbjct: 247 YLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPTFCRKA 294
>At3g22150.1 68416.m02796 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 820
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 713 SGFPLPPPLRREVPSTSRSRNGASSTLSP 627
S PLPPP + S S+++ SST SP
Sbjct: 4 SALPLPPPPPLSLQSPSQNQTRHSSTFSP 32
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 174 SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 28
S LQS RS F +L + K A + ++ + L++V + S+W+ LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,431,379
Number of Sequences: 28952
Number of extensions: 359680
Number of successful extensions: 1148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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