Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30792X
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   0.75 
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   3.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   4.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.3  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   5.3  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   5.3  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   7.0  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    24   7.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   7.0  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    24   7.0  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 161 ENLPFDIHNRYKLTLYFILYAGSGLSAPYLITVTSF 268
           E   F+++N Y LTL+ I++      AP++    +F
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFISMFITF 507


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 132 ETILTAVFLARIYPSTFTTVTS*HCISSYMRALDYQHPISSPS--PAFEE 275
           ET+   V+  R+ P++F   +    I  YM+A+  +   S+P   P FE+
Sbjct: 63  ETVNNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEK 112


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 196 LVTVVNVEG*ILARNTAVRMVSHEIRYHISAQFV 95
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 190 LQADIVFHPICGLWTISTLSHHRHQLLKK*FKLQRSF 300
           LQ DIV HP   ++  S L + +  + K   KL+ +F
Sbjct: 698 LQLDIVTHPFKSVYAFSCLFNIQDDVFKTFEKLKDTF 734


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  NVKMITPLTRISNKLGRN 112
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 38  YLLENRRNVKMITPLTRISNKLGRNVVTN 124
           YL   R   +  TPL+ ISN L  N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 188 RYKLTLYFILYAGSGLS 238
           RY+LTLY +LY  S +S
Sbjct: 525 RYRLTLYIMLYTLSQIS 541


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 317 LSLKQAKDLCSLNYFFKSW 261
           L+L+  +DLC  N F K+W
Sbjct: 337 LTLEGTRDLCIRNLFRKTW 355


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 353 SIMIHSVQFFTSLSLKQA 300
           S+M  SVQFFT+ SL +A
Sbjct: 656 SVMFLSVQFFTTPSLAEA 673


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 113 VVTNFVRNHSNGGIPGENLPF 175
           +    +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,973
Number of Sequences: 5004
Number of extensions: 30862
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)