Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30792X
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38)                 33   0.10 
SB_55184| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.73 
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)                     28   2.2  
SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)                   28   2.9  
SB_33056| Best HMM Match : DUF635 (HMM E-Value=8.7)                    27   3.9  
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)                   27   3.9  
SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)                 27   3.9  
SB_35506| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)                    26   9.0  

>SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38)
          Length = 469

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 74  TPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 208
           T LT+   ++ RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 36  TKLTKEEGEIQRNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 80


>SB_55184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 11  KSNFCFLL*YLLENRRNVKMITPLTRISNKLGRNVVTNFVR 133
           K N CF++ + L  R ++++   L R   K  + VVTNF+R
Sbjct: 32  KLNECFVMDFGLTRRTDLELRIKLVRNMPKTCQTVVTNFIR 72


>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
          Length = 442

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -1

Query: 378 YNI*FILLIHNDS*CTVFY*LKPKTSKGS 292
           +N  F+LL+++D  CTVF  L+P+++  S
Sbjct: 205 HNTLFVLLLNSDWNCTVFCRLRPRSTNRS 233


>SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)
          Length = 229

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 107 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 208
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 186 RNVIRERAKFHQRSQIPGESAESFIRNLYELAEY 219


>SB_33056| Best HMM Match : DUF635 (HMM E-Value=8.7)
          Length = 189

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 107 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 208
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 129 RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 162


>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
          Length = 664

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 107 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 208
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 75  RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 108


>SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)
          Length = 327

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 107 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 208
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 75  RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 108


>SB_35506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 58  KRKDDYPIDSHLKQIGQKCGN 120
           K+KDD P+DS +K+I Q   N
Sbjct: 34  KQKDDEPVDSFIKKITQALVN 54


>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
          Length = 884

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 182 ECRRVDSRQEYRR*NGFSRNSLPHFCPICL 93
           ECRR+   +  R  N F R+++ H  P+ L
Sbjct: 194 ECRRLSREEIERERNNFFRSTVSHGSPLSL 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,437,657
Number of Sequences: 59808
Number of extensions: 219653
Number of successful extensions: 486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)