Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30792X
         (381 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VI...    44   1e-04
X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc ...    42   9e-04
BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase su...    42   9e-04
BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase su...    42   9e-04
BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase su...    42   9e-04
AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase su...    42   9e-04
U31851-1|AAC50244.1|  230|Homo sapiens dystonin isoform 2 protein.     30   2.2  
BC002810-1|AAH02810.1|  554|Homo sapiens zinc finger protein 205...    28   8.7  
AF060865-1|AAC70007.1|  504|Homo sapiens zinc finger protein ZNF...    28   8.7  

>AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VIIc
           protein.
          Length = 63

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLI 253
           R   T+ VR +H   G PG+NLPF + N+++L     +Y GSG +AP+ I
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWRLLAMMTVYFGSGFAAPFFI 55


>X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc
           gene for subunit VIIc of cytochrome c oxidase (EC
           1.9.3.1).  ).
          Length = 63

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLI 253
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLV 55


>BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLI 253
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLV 55


>BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLI 253
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLV 55


>BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLI 253
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLV 55


>AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc precursor protein.
          Length = 63

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLI 253
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLV 55


>U31851-1|AAC50244.1|  230|Homo sapiens dystonin isoform 2 protein.
          Length = 230

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 175 RHSQPLQADIVFHPICGLWTISTLSHHRHQLL 270
           R   P  A+ + HP+C L  +++  HHRH  L
Sbjct: 9   RRGFPRLAETLQHPMCPLPLVASAGHHRHHRL 40


>BC002810-1|AAH02810.1|  554|Homo sapiens zinc finger protein 205
           protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 194 CNGCECRRVDSRQEYRR*NGFSRNSLPHFCPICLRC 87
           C+ C  +R   R +     G    + PH CPIC +C
Sbjct: 394 CDRC-AKRFTRRSDLVTHQGTHTGAKPHKCPICAKC 428


>AF060865-1|AAC70007.1|  504|Homo sapiens zinc finger protein ZNF210
           protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 194 CNGCECRRVDSRQEYRR*NGFSRNSLPHFCPICLRC 87
           C+ C  +R   R +     G    + PH CPIC +C
Sbjct: 344 CDRC-AKRFTRRSDLVTHQGTHTGAKPHKCPICAKC 378


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,338,322
Number of Sequences: 237096
Number of extensions: 1045730
Number of successful extensions: 1720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)