Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30792X
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    33   9e-04
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.30 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.30 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   2.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   4.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 33.5 bits (73), Expect = 9e-04
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
 Frame = +1

Query: 106 QKCGNEFREKPF*RR---YSW---RESTLRHSQPL-QADIVFHPICGLWTISTLSHHRHQ 264
           Q+C  +F    + +R   Y W   R+  +     L Q D+V +P       +TLSH  + 
Sbjct: 142 QRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANYSASTTLSHAEYS 201

Query: 265 LLKK*FKLQRSFACFRLKLVKNCTL*IIM 351
           +L   F LQR    F +++   C L +++
Sbjct: 202 MLLVYFHLQRHMGNFLIQVYGPCVLLVVL 230


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 162  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 58
            +PGIPP   FL+   TT +  L     NG  I  F
Sbjct: 1498 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1532


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 162  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 58
            +PGIPP   FL+   TT +  L     NG  I  F
Sbjct: 1494 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1528


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 171 GRFSPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 58
           GRF P     E FLT     +L +  E+R+    IFTF
Sbjct: 186 GRFVP-----EGFLTSCSFDYLTDTNEIRIFVATIFTF 218


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 234 YQHPISSPSPAFEEVIQAA 290
           + HP  +P P  E ++Q A
Sbjct: 466 HPHPPETPGPQVETILQNA 484


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 125 FVRNHSNGGIPGENLPFDIHNRYKLTLYFIL 217
           FV NH       + L +    RYK+ + F+L
Sbjct: 304 FVDNHDTQRDNPQILTYKYSKRYKMAVAFML 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,694
Number of Sequences: 438
Number of extensions: 2052
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)