Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30792X
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    29   1.0  
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (...    27   5.6  
At5g40430.1 68418.m04903 myb family transcription factor (MYB22)...    26   7.4  
At4g36390.1 68417.m05170 radical SAM domain-containing protein /...    26   7.4  
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa...    26   7.4  
At2g36270.1 68415.m04452 bZIP transcription factor family protei...    26   7.4  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    26   9.7  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 156 GIPPLEWFLTKFVTTFLPNLF 94
           GIP L  FLTK +T  LP LF
Sbjct: 344 GIPVLSMFLTKLLTVDLPRLF 364


>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
           (Ath-B) nearly identical to gi:2827143, cellulose
           synthase, catalytic subunit (Ath-B)
          Length = 1065

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 138 WFLTKFVTTFLPNLFEMRVNGV 73
           WFL+ F++ F   + EMR +GV
Sbjct: 879 WFLSLFLSIFATGILEMRWSGV 900


>At5g40430.1 68418.m04903 myb family transcription factor (MYB22)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 256

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 86  RISNKLGRNVVTNFVRNHS-NGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITVT 262
           R  N++G N++ N++R+ + N     +  P +I N Y      +LY    LS P  IT T
Sbjct: 159 RTVNRVGNNILENYIRSITINNDDESDGEPTNIEN-YHDDSEDMLYGEMNLS-PEAITQT 216

Query: 263 SF*RSNSSCRDPLL 304
           +   +++S   P +
Sbjct: 217 TKPLTDASTISPYI 230


>At4g36390.1 68417.m05170 radical SAM domain-containing protein /
           TRAM domain-containing protein similar to CDK5
           activator-binding protein [Rattus norvegicus]
           GI:7330738; contains Pfam profiles PF00919: UPF0004
           family protein, PF01938: TRAM domain, PF04055: radical
           SAM domain protein
          Length = 640

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 122 SLPHFCPICLRCESMG*SSLRFYDSRVGITAKNRSSIL 9
           S PH C +C +  +    +LRF  S+    + + SS L
Sbjct: 14  SNPHGCSLCFKASTQRCFALRFLSSKATHASSSSSSAL 51


>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 425

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 84  LASQTNWAEMW*RIS*ETILTAVFLARIY 170
           LA+Q  WA+M+ R+S  T+ +A  LA  Y
Sbjct: 313 LATQRRWAQMYGRVSSFTLSSAERLADTY 341


>At2g36270.1 68415.m04452 bZIP transcription factor family protein /
           ABA-responsive element-binding protein, putative similar
           to ABA-responsive element binding protein 1 (AREB1)
           GI:9967417 from [Arabidopsis thaliana]; contains a bZIP
           transcription factor basic domain signature (PDOC00036)
          Length = 442

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 68  MITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNR----YKLTL 205
           M+T  T+++++  R V ++  +   NGG  GEN PF    R    Y LTL
Sbjct: 1   MVTRETKLTSE--REVESSMAQARHNGGGGGENHPFTSLGRQSSIYSLTL 48


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 141 EWFLTKFVTTFLPNLFEMRVNGVIIFTFLRFSSRYHSKKQKF 16
           EW + K +   + N    R  G+ +FT L FS    S  ++F
Sbjct: 630 EWSVQKVLQFIINNCRSWRGEGMKMFTQLHFSYEQESHPEEF 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,009,727
Number of Sequences: 28952
Number of extensions: 156242
Number of successful extensions: 366
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)