Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30791
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)              111   4e-25
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)                     29   1.9  
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      29   3.3  
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)                  29   3.3  
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score =  111 bits (267), Expect = 4e-25
 Identities = 55/62 (88%), Positives = 58/62 (93%), Gaps = 1/62 (1%)
 Frame = +1

Query: 73  LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 249
           LG +H+  GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246

Query: 250 LA 255
           LA
Sbjct: 247 LA 248



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 26/54 (48%), Positives = 29/54 (53%)
 Frame = +3

Query: 249 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 410
           + AQDVA +CK +GITALHIKLRA            AQ          MKIGRI
Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300


>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 433

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 40  NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 216
           NK+ K    +TLG   +  ET    AH  A  N    HVT+   GRE  ++     KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388

Query: 217 DRDEASPYAAM 249
           +    +P + M
Sbjct: 389 EGAAPAPSSRM 399


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 112 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 225
           + +I  +FND    + DLSG+ETI  ++   K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189


>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
          Length = 352

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 40  NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 216
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++ +   KV A
Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298

Query: 217 DRDEASPYAAM-LAHRM 264
           +    +P   M  AH M
Sbjct: 299 EGAAPAPSPRMHAAHSM 315


>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 40  NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 216
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++     KV A
Sbjct: 349 NKLQKATDSMTLGANAINTETKPLGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 408

Query: 217 DRDEASPYAAM-LAHRM 264
           +    +P + M  AH M
Sbjct: 409 EGAAPAPSSRMHAAHSM 425


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 40  NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 219
           NK+ K    +TLG   +  ET    AH  A  +    HVTD       ++ +   KV A+
Sbjct: 368 NKLQKATNSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDRVPSRRQSKDSAPAKVHAE 427

Query: 220 RDEASPYA 243
              A+P A
Sbjct: 428 GAAAAPAA 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,571,310
Number of Sequences: 59808
Number of extensions: 349576
Number of successful extensions: 814
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)