Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30791
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   125   2e-29
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    31   0.55 
U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  125 bits (302), Expect = 2e-29
 Identities = 60/78 (76%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
 Frame = +1

Query: 25  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 201
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 202 MKVKADRDEASPYAAMLA 255
           MKVKADRDE+SPYAAMLA
Sbjct: 61  MKVKADRDESSPYAAMLA 78



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 35/65 (53%), Positives = 39/65 (60%)
 Frame = +3

Query: 249 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 428
           + AQDVA++CK LGI ALHIKLRA            AQ          MKIGRIEDVTP+
Sbjct: 77  LAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPI 136

Query: 429 PSDST 443
           PSD T
Sbjct: 137 PSDCT 141


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 251 WRTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 400
           W+  C+R+    W N +A      WWK+N +  S     T   C SF + D
Sbjct: 488 WKPPCTRDKIFEWMNNVATDFRSEWWKKNNNLHSPNPSGTGQRCLSFAFGD 538


>U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical
           protein F47C12.4 protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 251 WRTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 400
           W+  C+R     W+N +A      WWK+N +  S     T   C SF + D
Sbjct: 486 WKAPCTRGKIFEWNNNVATDFREEWWKKNNNNHSPNPSGTGQRCLSFAFGD 536


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 79  PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 207
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,391
Number of Sequences: 27780
Number of extensions: 254434
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)