Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30791
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           119   1e-27
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   118   2e-27
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   118   3e-27
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    28   3.6  
At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kina...    27   8.3  

>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  119 bits (286), Expect = 1e-27
 Identities = 58/77 (75%), Positives = 64/77 (83%)
 Frame = +1

Query: 25  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 204
           M+ RK K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 205 KVKADRDEASPYAAMLA 255
           KVKADRDE+SPYAAMLA
Sbjct: 60  KVKADRDESSPYAAMLA 76



 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 34/65 (52%), Positives = 41/65 (63%)
 Frame = +3

Query: 249 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 428
           + AQDVA++CK LGITA+H+KLRA            AQ          MKIGRIEDVTP+
Sbjct: 75  LAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPI 134

Query: 429 PSDST 443
           P+DST
Sbjct: 135 PTDST 139


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  118 bits (285), Expect = 2e-27
 Identities = 58/77 (75%), Positives = 63/77 (81%)
 Frame = +1

Query: 25  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 204
           M+ RK K  K E  VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 205 KVKADRDEASPYAAMLA 255
           KVKADRDE+SPYAAMLA
Sbjct: 60  KVKADRDESSPYAAMLA 76



 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 34/65 (52%), Positives = 41/65 (63%)
 Frame = +3

Query: 249 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 428
           + AQDVA++CK LGITA+H+KLRA            AQ          MKIGRIEDVTP+
Sbjct: 75  LAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPI 134

Query: 429 PSDST 443
           P+DST
Sbjct: 135 PTDST 139


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  118 bits (283), Expect = 3e-27
 Identities = 57/77 (74%), Positives = 63/77 (81%)
 Frame = +1

Query: 25  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 204
           M+ RK K  K E  VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 205 KVKADRDEASPYAAMLA 255
           KVKADRDE+SPYAAMLA
Sbjct: 60  KVKADRDESSPYAAMLA 76



 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 34/65 (52%), Positives = 41/65 (63%)
 Frame = +3

Query: 249 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 428
           + AQDVA++CK LGITA+H+KLRA            AQ          MKIGRIEDVTP+
Sbjct: 75  LAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPI 134

Query: 429 PSDST 443
           P+DST
Sbjct: 135 PTDST 139


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 478 YSLRPLRPPFLRVESDGTGVTSSMR 404
           Y   P+ PP +  E DGT + S+MR
Sbjct: 225 YLFLPVNPPTVEAERDGTEIDSTMR 249


>At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 815

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 245 LCWRTGCSREMQNSWHNGLAHKAPCYWW 328
           L W TG S E   SW NG+ H    Y W
Sbjct: 188 LTWVTGDSYE--GSWLNGMMHGVGVYTW 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,295,311
Number of Sequences: 28952
Number of extensions: 231470
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)