Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30789
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    78   2e-15
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    27   2.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   3.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   6.6  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   8.7  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 37/73 (50%), Positives = 49/73 (67%)
 Frame = +3

Query: 279 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 458
           DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D
Sbjct: 80  DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPD 139

Query: 459 GMVAMMEYRDFDG 497
            MV +M YR+ DG
Sbjct: 140 AMVVLMNYRE-DG 151



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = +1

Query: 37  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 213
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 214 SAVESGVDIV 243
              E+  ++V
Sbjct: 60  EGTETVNNLV 69


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 139 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHS*SKHTP 273
           +TRA+  +Q++G NP +E+        +   +D+  N S S+ +P
Sbjct: 128 LTRAEYILQLQGINPVSEDISNSDPEFLMEIMDVHENISASRDSP 172


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 74   ISSPVIMSL*IFILMDWRRLKII 6
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 252 QLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 377
           +L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 96  KLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 507 VFAYHQSLYIPSWQPC-HHN 451
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 252 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 154
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 431 ELKFLKPAEDVFHYFVHVCFKYFNLVR 351
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,612
Number of Sequences: 5004
Number of extensions: 58612
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)