Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30788
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.4  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   5.8  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   5.8  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +3

Query: 252  EAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSKTAEVS 431
            + P K+ K + S D+TAAD  +   +  +  ++   +   IDE ++ + + +     E +
Sbjct: 1849 DIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSKKPGYVEKN 1908

Query: 432  K 434
            K
Sbjct: 1909 K 1909


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 261 VKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAID--EEDVAEITDEGSKTAEVSK 434
           V+ E     ND+T    + VA+    VD  +D   +A+D  E++++++ +   +  + SK
Sbjct: 14  VESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFENFDESK 73


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +1

Query: 103 SPELYCEICKTSMTCSEQMTMHLNGKRH---LTKEKQHILKMMK 225
           S  + C +C  +     Q+  H N K+H   L K  Q I K  K
Sbjct: 267 SNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAK 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,165
Number of Sequences: 5004
Number of extensions: 29029
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)