Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30788
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 36 0.030
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 35 0.069
08_01_1026 - 10366534-10368021,10368505-10368525 33 0.28
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 32 0.49
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 31 0.64
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 31 1.1
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 1.1
09_06_0031 - 20344594-20344611,20345578-20345813,20345899-203460... 30 1.5
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 29 2.6
04_03_1022 - 21778315-21779007 29 2.6
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 3.4
12_02_0347 + 17808819-17809386,17809920-17810005,17810596-17810628 28 6.0
09_04_0159 + 15213752-15214028,15214158-15214399 28 7.9
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 28 7.9
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287... 28 7.9
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 35.9 bits (79), Expect = 0.030
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 106 PELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQH 207
P +C +CKT+ T + + H +GK+H K K +
Sbjct: 92 PPWFCSLCKTTTTSKQTLLSHADGKKHRAKAKAY 125
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 34.7 bits (76), Expect = 0.069
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 91 AKPISPELY-CEICKTSMTCSEQMTMHLNGKRHLTKE 198
++ +S ELY C++C T + HL GK+HL +E
Sbjct: 261 SESLSLELYSCKVCSVKCTFERMLAYHLTGKKHLKQE 297
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 109 ELYCEICKTSMTCSEQMTMHLNGKRHLTK 195
+L CEICK + ++ H GK+H K
Sbjct: 300 QLSCEICKLQCNSEKVLSDHRYGKKHQAK 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +1
Query: 94 KPISPELYCEICKTSMTCSEQMTMHLNGKRH 186
K + L C +C+ TC + HL +H
Sbjct: 212 KAAAATLICRVCQAKFTCQSDLQSHLKVMKH 242
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 94 KPISPELYCEICKTSMTCSEQMTMHLNGKRHLTK 195
KP + +L C +C + T + M HLNGK H K
Sbjct: 45 KPKAADLTCAVCGITSTGEKAMQDHLNGKSHKKK 78
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 94 KPISPELYCEICKTSMTCSEQMTMHLNGKRHLTK 195
K I L C C T M +HL GK+H K
Sbjct: 334 KQIGEFLGCASCNVMATSESGMRLHLAGKKHRNK 367
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKRH 186
YC+IC+ + + M HL GKRH
Sbjct: 383 YCDICEVRCSSEKMMASHLAGKRH 406
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 252 EAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSKTAE 425
E PV+ +EKS+D + A+ +V K + A D + D+ + E+T K E
Sbjct: 103 EVPVENSSSEKSSDNSVAE--VVPEKDAETPAAQDTTSVVEDKSETPEMTASSEKPEE 158
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKRHL 189
+CE+C T + HL+GK+H+
Sbjct: 363 FCEVCSLKCTSQRMLADHLSGKKHI 387
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 118 CEICKTSMTCSEQMTMHLNGKRHLTK 195
C C+ TC + HL G+RH K
Sbjct: 239 CRACQAVCTCESDLQNHLRGRRHQLK 264
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 198 ETAHPENDEMWIRK*KKTEAPVKQEKTEKSNDETAADCIIVANKAIDVD 344
E E +E W+R+ ++ E K+E+ E+++DE I++ DVD
Sbjct: 136 EGVEAEVEEAWLRQDEEEEVEEKEEEEEEADDEVQMYMEILSRDPGDVD 184
>09_06_0031 -
20344594-20344611,20345578-20345813,20345899-20346018,
20346102-20346198,20348243-20348335
Length = 187
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKR 183
YCEI TS+ S MT+H+ GKR
Sbjct: 67 YCEIDGTSLCLSCDMTVHVGGKR 89
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 118 CEICKTSMTCSEQMTMHLNGKRHLTK 195
C +C+ S T + HL GKRH K
Sbjct: 255 CALCQVSATSEGALNEHLEGKRHKAK 280
>04_03_1022 - 21778315-21779007
Length = 230
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 264 KQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDE 407
+ + ++ +ETAA ++V + + + + +D ++V +ITDE
Sbjct: 166 RARRRREAEEETAAAAVVVDDVEVSSSHHVHAVAHVVDGQNVVDITDE 213
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 94 KPISPELYCEICKTSMTCSEQMTMHLNGKRH 186
K + P L CE+CK E + +H GK+H
Sbjct: 273 KVVQP-LTCEVCKIQCDTPEVLRIHKTGKKH 302
>12_02_0347 + 17808819-17809386,17809920-17810005,17810596-17810628
Length = 228
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 234 RK*KKTEAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDE 407
+K KKT K+ KT + E +CI + I + + L +A+ EE +A +
Sbjct: 46 KKKKKTTTTKKKTKTMRFTQEQINNCIAYKDVEIPFNDNMPSLLEALGEETLANFPQD 103
>09_04_0159 + 15213752-15214028,15214158-15214399
Length = 172
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 165 HSHLLRASHGSLAYFTIQL 109
H HLLRA+ GSLA+ T L
Sbjct: 86 HHHLLRAASGSLAWMTAAL 104
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 324 NKAIDVDTAID-LLTQAIDEEDVAEITDEGSKTAEVSKT 437
+K ID A+D + QA+DEED+ E D+ AE+S T
Sbjct: 488 DKPIDDLPALDPTIEQALDEEDIGEDVDQA--VAEMSDT 524
>03_06_0561 +
34728428-34728439,34728529-34728615,34728729-34728750,
34728843-34728925,34729139-34729171,34729468-34729546,
34729642-34729694,34729931-34729991,34730168-34730250,
34730418-34730513
Length = 202
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKRH 186
YC++C+ + S H+NGK+H
Sbjct: 83 YCKVCECVVKDSANYLDHINGKKH 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,408
Number of Sequences: 37544
Number of extensions: 197941
Number of successful extensions: 563
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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