Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30788
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 31   0.66 
SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_38604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    28   8.1  

>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +1

Query: 25  IRREKKNLKPIXXXXXXXXXXXAKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTK 195
           + +  K  KP               + P+ +C +CK       Q   H +GK HLT+
Sbjct: 591 VTQPPKPAKPFTPHLKPPKPKPGSHLDPDTHCPLCKKWFNSRVQADSHYSGKAHLTQ 647



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 97  PISPELY-CEICKTSMTCSEQMTMHLNGKRHLTK 195
           P   +LY CEIC   +  + Q   H  GK HL K
Sbjct: 548 PSDNKLYICEICHVELNSASQAFQHFQGKAHLGK 581



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 94  KPISPELY-CEICKTSMTCSEQMTMHLNGKRH 186
           K +  +LY CE C  ++   +QM+ HL G RH
Sbjct: 691 KNVKTQLYTCEPCNITLNSQKQMSQHLLGLRH 722



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 109 ELYCEICKTSMTCSEQMTMHLNGKRH 186
           + YC+ C  SM   +QM  H+   RH
Sbjct: 781 QYYCQDCDISMNSIKQMEQHMTSARH 806


>SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 916

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 315 IVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSK 416
           I   +A+D D  ++LL +A D+ED+ +  DEG +
Sbjct: 51  IATLRALD-DEILELLVEAEDDEDLEKFLDEGDE 83


>SB_38604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 514 GTAEGEDDYDWGNGSGNWEDAPG 582
           G   GEDDYD GNG  N +D  G
Sbjct: 116 GDDNGEDDYD-GNGDNNNDDNDG 137


>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 118 CEICKTSMTCSEQMTMHLNGKRHL 189
           C++CK          MHL+GK+H+
Sbjct: 359 CKVCKIMCNKEHAFRMHLHGKKHV 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,895,332
Number of Sequences: 59808
Number of extensions: 232460
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)