Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30788
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth...    34   0.11 
AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopente...    34   0.11 
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    32   0.33 
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    31   1.0  

>U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth
           rate protein 1 protein.
          Length = 430

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 LYCEICKTSMTCSEQMTMHLNGKRHLTKEKQ 204
           L CEIC  SMT  +    H++GK+H    KQ
Sbjct: 392 LNCEICNISMTGKDNWQKHIDGKKHKHHAKQ 422


>AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopentenyl
           transferase protein.
          Length = 430

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 LYCEICKTSMTCSEQMTMHLNGKRHLTKEKQ 204
           L CEIC  SMT  +    H++GK+H    KQ
Sbjct: 392 LNCEICNISMTGKDNWQKHIDGKKHKHHAKQ 422


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  AKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQ 204
           A  + P LYC+ C+ S+     MT H+  K+H   EK+
Sbjct: 65  AASVEP-LYCKACRKSIKSENAMTDHVASKKHKENEKK 101


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
           protein ZC123.3 protein.
          Length = 1623

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 118 CEICKTSMTCSEQMTMHLNGKRHLTKEKQHI 210
           CE+C  +    E    HLN  RHL + K+ +
Sbjct: 534 CEMCSETFATKEAFLSHLNSARHLQQAKKQL 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,072,396
Number of Sequences: 27780
Number of extensions: 174921
Number of successful extensions: 590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)