Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30788
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          26   0.38 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.2  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 CEICKTSMTCSEQMTMHLNGKRHLTKEK 201
           CE CK +    + M  ++  KRHL ++K
Sbjct: 6   CEKCKITANRQQVMRQNMKLKRHLAQDK 33


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 124 ICKTSMTCSEQMTMHLNGKRHLTKEKQH 207
           +C T   C + ++  L  KRH  KE+QH
Sbjct: 370 VCYTCDVCGKTLSTKLTLKRH--KEQQH 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,681
Number of Sequences: 438
Number of extensions: 2050
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)