Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30788
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 34 0.10
At2g19385.1 68415.m02261 expressed protein weak similarity to Ce... 31 0.94
At5g61180.1 68418.m07675 hypothetical protein contains Pfam prof... 30 1.6
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 2.2
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 29 2.2
At2g38440.1 68415.m04721 expressed protein 29 3.8
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 28 5.0
At2g24030.2 68415.m02870 expressed protein and genefinder 28 5.0
At2g24030.1 68415.m02871 expressed protein and genefinder 28 5.0
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 28 5.0
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 28 5.0
At1g68370.1 68414.m07809 gravity-responsive protein / altered re... 27 8.8
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 33.9 bits (74), Expect = 0.10
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 91 AKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQ 204
A+ + + +C +C +MTC + H+ GK+H K +
Sbjct: 78 AELFNSQWFCSLCNATMTCEQDYFAHVYGKKHQEKANE 115
Score = 31.9 bits (69), Expect = 0.41
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKRH 186
+C +C TC + + H NG++H
Sbjct: 225 FCSLCNVKATCQQNLLSHANGRKH 248
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMK 225
+C +C + T + + H NGK+H K ++ + K
Sbjct: 155 FCSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQK 191
>At2g19385.1 68415.m02261 expressed protein weak similarity to Cell
growth regulating nucleolar protein (Swiss-Prot:Q08288)
[Mus musculus]
Length = 275
Score = 30.7 bits (66), Expect = 0.94
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKRHLTKEK 201
+C +C T T + + H +GK+H K K
Sbjct: 96 FCSLCNTKATSQQTLLAHADGKKHRGKAK 124
>At5g61180.1 68418.m07675 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 346
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 115 YCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMK 225
+CE+C S + + +T HL+G+RH +L +++
Sbjct: 286 FCELCNVSCS-NHDLTAHLSGRRHRANPVDALLSVIQ 321
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +3
Query: 282 KSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSKTAE 425
K + A+ ++ N+ IDVD +++LL A++EE+ + + + K ++
Sbjct: 418 KISPADVAENLMARNQQIDVDKSLNLLISALEEENQYQRSQQEKKKSK 465
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +3
Query: 264 KQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGS 413
+QE +S+DE ++D I VAN ++ + ++I+ DVA+ +DEGS
Sbjct: 131 QQESMIQSSDEISSDEIKVANSE---ESNLKDEDKSIESNDVAQKSDEGS 177
>At2g38440.1 68415.m04721 expressed protein
Length = 1399
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 288 NDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSKTAEVS 431
+DET DC+ V N +DVD+ + + + VA+I D S AE+S
Sbjct: 717 DDET--DCVSVTNVVVDVDSK-NSVADVGSQSSVADI-DSQSSVAEIS 760
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 514 GTAEGEDDYDWGNGSGNWEDAPGEEL 591
GT G D G+G GNW PGEE+
Sbjct: 156 GTGRGSDFKRDGSGRGNW-GTPGEEI 180
>At2g24030.2 68415.m02870 expressed protein and genefinder
Length = 374
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 109 ELYCEICKTSMTCSEQMTMHLNGKRH 186
+ +CEICK C M H GK+H
Sbjct: 212 KFWCEICKVGTYCQIVMRDHELGKKH 237
>At2g24030.1 68415.m02871 expressed protein and genefinder
Length = 455
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 109 ELYCEICKTSMTCSEQMTMHLNGKRH 186
+ +CEICK C M H GK+H
Sbjct: 293 KFWCEICKVGTYCQIVMRDHELGKKH 318
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 195 RETAHPENDEMWIRK*KKTEAPVKQEKTEKSNDETAADCIIVANKA 332
++T+ PE DE KK E PV+++K EK + + + KA
Sbjct: 125 KDTSIPETDEKVSPPEKKLEKPVERKKVEKPIERKQVEKPVERKKA 170
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Frame = +3
Query: 198 ETAHPENDEMWIRK*KKTEAPVK------QEKTEKSNDETAADCIIVANKAIDVDTAIDL 359
E A P E + K +K E + +EK +K + + A K D +TAI
Sbjct: 206 EMAVPSRKEPEVEKKRKPEPEPEPEPEFGEEKQKKLKAQKEKELGNAAYKKKDFETAIQH 265
Query: 360 LTQA--IDEEDVAEITDEGSKTAEVSK 434
+ A ID+ED++ IT+ + E+ K
Sbjct: 266 YSTAMEIDDEDISYITNRAAVHLEMGK 292
>At1g68370.1 68414.m07809 gravity-responsive protein / altered
response to gravity protein (ARG1) identical to Altered
Response to Gravity [Arabidopsis thaliana] GI:4249662;
contains Pfam profile PF00226 DnaJ domain
Length = 410
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 267 QEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSKTAEVSK 434
QE+ EK+ T+A + + +DT ++ L A D E EG + EVS+
Sbjct: 201 QEEREKTGKVTSAGMYFLHFQVYRMDTTVNALAAAKDPESAFFKRLEGLQPCEVSE 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,382,240
Number of Sequences: 28952
Number of extensions: 158696
Number of successful extensions: 504
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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