Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30787
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 119 3e-28
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 119 3e-28
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 30 0.20
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 1.9
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.4
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 4.4
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 5.8
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 5.8
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 119 bits (287), Expect = 3e-28
Identities = 52/66 (78%), Positives = 61/66 (92%)
Frame = +1
Query: 58 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 237
NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15 NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74
Query: 238 IKNGKK 255
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 108 bits (259), Expect = 6e-25
Identities = 49/65 (75%), Positives = 57/65 (87%)
Frame = +3
Query: 249 KEVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 428
K+VTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79 KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138
Query: 429 ERPRS 443
E+PR+
Sbjct: 139 EKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 119 bits (287), Expect = 3e-28
Identities = 52/66 (78%), Positives = 61/66 (92%)
Frame = +1
Query: 58 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 237
NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15 NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74
Query: 238 IKNGKK 255
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 108 bits (259), Expect = 6e-25
Identities = 49/65 (75%), Positives = 57/65 (87%)
Frame = +3
Query: 249 KEVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 428
K+VTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79 KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138
Query: 429 ERPRS 443
E+PR+
Sbjct: 139 EKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 142 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 237
G+ +G+ V+ K+PNSA+RK RV+L
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -3
Query: 183 TNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPRGLPIW 13
++F +D++ C CT V+LP LE F PS V H++ A +P+ +P W
Sbjct: 302 SDFRQDESYCRICTQSCVTLP-----DILEAF--PSCHPPVDHLISA--LPQLMPRW 349
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 382 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 272
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 315 VLRRFLRCGLGNRHGGRMRSLLSVLNELYTDAFA 214
+++RFL NR+ + S++ ++N LYTD F+
Sbjct: 802 IVQRFLVQQDSNRYLHPLLSVMDLINLLYTDIFS 835
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 79 WADKEFKKAHMGTKWKANPFGGASHAKGIV 168
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 440 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 318
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,610
Number of Sequences: 5004
Number of extensions: 49911
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -