Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30786
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 120 8e-28
03_01_0547 + 4093196-4093657,4094267-4095148 120 8e-28
03_01_0544 + 4082528-4082989,4083585-4084466 120 8e-28
03_01_0543 + 4076981-4077442,4078145-4079026 120 8e-28
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 34 0.11
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 33 0.26
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 31 0.61
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 31 0.61
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 2.4
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 4.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 9.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 120 bits (290), Expect = 8e-28
Identities = 52/80 (65%), Positives = 65/80 (81%)
Frame = +1
Query: 1 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 180
GYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR
Sbjct: 311 GYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRR 370
Query: 181 TGKSTEVNPKSIKSGDAAIV 240
+GK E PK +K+GDA +V
Sbjct: 371 SGKELEKEPKFLKNGDAGMV 390
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +3
Query: 255 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 356
KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 120 bits (290), Expect = 8e-28
Identities = 52/80 (65%), Positives = 65/80 (81%)
Frame = +1
Query: 1 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 180
GYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR
Sbjct: 311 GYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRR 370
Query: 181 TGKSTEVNPKSIKSGDAAIV 240
+GK E PK +K+GDA +V
Sbjct: 371 SGKELEKEPKFLKNGDAGMV 390
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +3
Query: 255 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 356
KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 120 bits (290), Expect = 8e-28
Identities = 52/80 (65%), Positives = 65/80 (81%)
Frame = +1
Query: 1 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 180
GYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR
Sbjct: 311 GYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRR 370
Query: 181 TGKSTEVNPKSIKSGDAAIV 240
+GK E PK +K+GDA +V
Sbjct: 371 SGKELEKEPKFLKNGDAGMV 390
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +3
Query: 255 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 356
KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 120 bits (290), Expect = 8e-28
Identities = 52/80 (65%), Positives = 65/80 (81%)
Frame = +1
Query: 1 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 180
GYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR
Sbjct: 311 GYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRR 370
Query: 181 TGKSTEVNPKSIKSGDAAIV 240
+GK E PK +K+GDA +V
Sbjct: 371 SGKELEKEPKFLKNGDAGMV 390
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +3
Query: 255 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 356
KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 396 KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 255 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 356
K +CVE F LGR +R T+AVG++ V
Sbjct: 617 KEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 237 CQLGTFKPLCVESFQEFPPLGRFAVR 314
C++ +C+E+F +FP LGRF +R
Sbjct: 390 CRIQVNNLICIENFSDFPQLGRFTLR 415
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 258 PLCVESFQEFPPLGRFAVRDMRQTVAVGVI 347
P+CV+ F + LGR +R T+AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 258 PLCVESFQEFPPLGRFAVRDMRQTVAVGVI 347
P+CV+ F + LGR +R T+AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 541 KPCKKYRKGMSCSPF----VLRNTFR*MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPP 374
K C +Y ++ S F +L NT R + ++ C K+ S + FL ++ FSA + P
Sbjct: 456 KNCCRYMYLLNLSEFSRDPILPNTARALHFKDCRKSPKNYSETKFLRILDFSACTINELP 515
Query: 373 PASLKLTAL 347
+ L+ L
Sbjct: 516 DSISHLSLL 524
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 73 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 216
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 349 LMTPTATVCLMSRTAKRPRGGNSWKDST 266
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,140
Number of Sequences: 37544
Number of extensions: 328869
Number of successful extensions: 907
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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