Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30786
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   4e-30
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            38   0.007
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           30   1.9  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            29   2.5  
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)                 29   3.3  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    29   3.3  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (309), Expect = 4e-30
 Identities = 57/80 (71%), Positives = 66/80 (82%)
 Frame = +1

Query: 1   GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 180
           G VAGD KNNPPK    FTAQVIV+NHPG+I  GY+PVLDCHTAHIACKF ++ EK+DRR
Sbjct: 182 GNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRR 241

Query: 181 TGKSTEVNPKSIKSGDAAIV 240
           +GK  E NPK IK+GDAA+V
Sbjct: 242 SGKKLEDNPKMIKTGDAAMV 261



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 31/52 (59%), Positives = 41/52 (78%)
 Frame = +3

Query: 204 PKIHQVWRCSHCQLGTFKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 359
           PK+ +    +  ++   KP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 250 PKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +3

Query: 240 QLGTFKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 347
           +L T +P+CVE ++++  LGRF +R    T+A GVI
Sbjct: 43  ELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 198 SQPKIHQVWRCSHCQLGTFKPLCVESFQEFPPLGRFAVRD 317
           ++P+  +  + +  +L T   +C+E F +F  +GRF +RD
Sbjct: 506 TRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 433 C*QHNFSYNCDTSFTERCFEGQKGYNSFLFYIFYKACNVTLFYNL-YKVIHNISETFCYD 609
           C   N  +  D  +   C   ++G +    Y   KAC   L Y+  +   H   E +C++
Sbjct: 250 CGSCNRIFAGDECYERHCVPNKEGNSICSKYYRCKACKKVLAYSKRHPRDHKCGEVYCFN 309

Query: 610 CK 615
           CK
Sbjct: 310 CK 311


>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
          Length = 991

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 171 NFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFG 19
           +++ D+C F G V +   ++W   V     ++ HN  + K+ S  +  V G
Sbjct: 148 DYYLDYCYFMGEVSTTNDEFWSAEV-----LINHNPCTLKLDSGSKVTVVG 193


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 358 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 260
           LT+L  PT    L  RT  +PR G  W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 221  DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 117
            DL +F  G+T++ LP   ST  +    NLQ  W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 565 NYKIMLHYKPCKKYRKGMSCSPF 497
           +YK  L  KPCK +R+G    PF
Sbjct: 253 DYKSALGAKPCKYFREGKGTCPF 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,317,016
Number of Sequences: 59808
Number of extensions: 390112
Number of successful extensions: 1121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)