Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30784
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   1.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   5.0  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   5.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.7  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   8.8  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   8.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   8.8  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 656 LERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQLPNRTL 507
           L RRS   R S +RS S L  R   + +   + R     VSG Q P+ ++
Sbjct: 705 LSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSM 754


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 289 FTRVPATCSYKRCQIIRKGIHTISAFAPNDL 197
           F+++   C +  C I +KGIH ++   PN+L
Sbjct: 724 FSQISFLCGFLNCFIQKKGIHNVT---PNNL 751


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 403 AKYLAIAASLTNSWPCSFSLAALYV 477
           + YL++AA L+  W   +SL  LY+
Sbjct: 3   SSYLSLAARLSQCWISPWSLCCLYI 27


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 640 IGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQ 533
           +G+  + I LC G   ATIP  +E K    K  +F+
Sbjct: 90  LGLPNKYIALCLGSHAATIPGCMEYKMIYDKPTDFE 125


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 434  VKEAAMAKYFASEIAQTLTSKCID 363
            ++   + K FAS++ Q+L S C D
Sbjct: 1301 IRRGPLVKQFASKLLQSLKSSCFD 1324


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -3

Query: 574 LERKQFGKKIYEFQGIS--YQIAHCRH 500
           +++K++  K + F G++  Y +AHCRH
Sbjct: 462 VDKKEWTDKNHIFYGLTTNYLLAHCRH 488


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 644 SDWYRGSDDRSVSGLYGRND 585
           S W +G+D  S+SG+ G  D
Sbjct: 16  SGWLQGADTGSISGILGMRD 35


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 105 CICLK*SIG--NIFYNIK*PKCLYALKLRKINHKSFGAKALIVCI 233
           C+ LK S    N+FY IK  K LY    R I++       +I C+
Sbjct: 706 CLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGHLHESGIIYCL 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,763
Number of Sequences: 5004
Number of extensions: 65344
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)