Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30784
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 60 2e-09
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 38 0.011
04_04_0667 + 27097741-27098085,27098203-27098547 35 0.080
02_05_0134 + 26161904-26162776 35 0.080
03_01_0630 + 4635297-4636220 34 0.11
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 34 0.14
10_06_0180 + 11526139-11526172,11526365-11527218 33 0.25
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 33 0.25
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 33 0.25
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 31 0.99
04_01_0412 + 5469200-5469395,5469554-5469672 31 0.99
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 31 1.3
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425... 29 4.0
09_06_0034 + 20370672-20371109,20371120-20371515 29 5.3
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 28 7.0
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 28 9.2
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/78 (39%), Positives = 43/78 (55%)
Frame = -3
Query: 751 SGTCMVHFDNVKVHESSILGEXXXXXXXXXGFLNEGRIGIAAQMIGLCQGCMDATIPYTL 572
S TC + F+N V ++LGE L+ R+ +AA IGL Q C+D +PY
Sbjct: 235 SDTCELVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVR 294
Query: 571 ERKQFGKKIYEFQGISYQ 518
+R+QFG+ I EFQ I Q
Sbjct: 295 QREQFGRPIGEFQFIQVQ 312
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = -2
Query: 509 LQTQLEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDF 330
+ T L+++R Y+ AR ++G K+ A FA+E A + + I +GG G+ ++
Sbjct: 336 MYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQAIQCLGGNGYINEY 395
Query: 329 PQEKFYRDAKIGTIYEGTSNMQ 264
P + RDAK+ I GTS ++
Sbjct: 396 PTGRLLRDAKLFEIGAGTSEIR 417
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 37.5 bits (83), Expect = 0.011
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = -3
Query: 748 GTCMVHFDNVKVHESSILGEXXXXXXXXXGFLNEGRIGIAAQMIGLCQGCMDATIPYTLE 569
G + F+NV+V ++IL G L GR+ ++IG + M+ + L
Sbjct: 621 GHAEITFENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALS 680
Query: 568 RKQFGKKIYEFQGISYQIAHCR 503
R FGKKI + +A CR
Sbjct: 681 RTTFGKKIAQHGSFLADLAKCR 702
Score = 37.1 bits (82), Expect = 0.015
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = -2
Query: 506 QTQLEAARLLTYNAA-RLKEHGHEFVKEA-AMAKYFASEIAQTLTSKCIDFMGGVGFTRD 333
+ +LE ARLL AA +L HG++ + AMAK A +A + + GG G + D
Sbjct: 702 RVELEQARLLVLEAADQLDRHGNKKARGILAMAKVAAPNMALKVLDMAMQVHGGAGLSSD 761
Query: 332 FPQEKFYRDAKIGTIYEGTSNMQLQTL 252
+ A+ I +G + L T+
Sbjct: 762 TVLSHLWATARTLRIADGPDEVHLGTI 788
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 34.7 bits (76), Expect = 0.080
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 674 QVRGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKED--LRVSGHQLPNR 513
QV WF +R+ W + + L + D+LH+R E++++E L V H+L R
Sbjct: 67 QVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRER 122
>02_05_0134 + 26161904-26162776
Length = 290
Score = 34.7 bits (76), Expect = 0.080
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 674 QVRGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVS 534
QV WF +R+ W + + L + D+LH R E++R+E L ++
Sbjct: 105 QVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALA 151
>03_01_0630 + 4635297-4636220
Length = 307
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = -2
Query: 674 QVRGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQLPNRTLQTQL 495
QV WF RR+ W +R + L R+D+L + +R++ ++ +R +
Sbjct: 82 QVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEVRAHRCVLPDA 141
Query: 494 EAARLLTYNAARLKE 450
+ LT+N+ + +
Sbjct: 142 RESLSLTFNSCSIDQ 156
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = -2
Query: 497 LEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEK 318
++A L+ + +L E G A++ K + S +A+ + S + +GG G DF K
Sbjct: 332 IQAMLLVGWRLCKLYESGKMTPGHASLGKGWTSRMAREVVSLGRELLGGNGILADFLVAK 391
Query: 317 FYRDAKIGTIYEGT 276
+ D + YEGT
Sbjct: 392 AFCDLEPIYSYEGT 405
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 643 RIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQ 533
R+ +A Q IG+ G D Y ERKQFG + FQ
Sbjct: 283 RVMVAWQPIGISMGVFDVCHRYLKERKQFGVPLVAFQ 319
>10_06_0180 + 11526139-11526172,11526365-11527218
Length = 295
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 713 ARIEYPWRIWQRVQVRGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKE 549
ARI R+ R QV WF RR+ W +R + L R+D+L + +R++
Sbjct: 83 ARIARDLRLHPR-QVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRD 136
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -3
Query: 655 LNEGRIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQ 533
L+ R+ +A IG+ G DA + Y ERKQFG + FQ
Sbjct: 312 LSFSRVIVAWISIGIAAGVYDACLRYLGERKQFGAPLAAFQ 352
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = -2
Query: 482 LLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDA 303
LL + L + G +A++ K + ++ A+ + + +GG G DF K + D
Sbjct: 361 LLGWRLYELHDSGRMTTGQASLGKAWITKKARETVALGRELLGGNGIVTDFHVGKAFCDM 420
Query: 302 KIGTIYEGT 276
+ YEG+
Sbjct: 421 ESLYTYEGS 429
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = -2
Query: 497 LEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEK 318
++A L+ + +L E G A++ K + S+ A+ + S + +GG G DF K
Sbjct: 309 IQAMLLVGWRLCKLYESGKMTPGHASLGKAWTSKKAREVVSLGRELLGGNGILADFLVAK 368
Query: 317 FYRDAKIGTIYEGT 276
+ D + YEGT
Sbjct: 369 AFCDLEPIFSYEGT 382
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 643 RIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQ 533
RI +A Q IG+ G D Y ERKQFG + FQ
Sbjct: 260 RIMVAWQPIGISMGVFDMCHRYLKERKQFGVPLAAFQ 296
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -2
Query: 497 LEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEK 318
++A LL + +L + G +A++ K + ++ A+ + + +GG G DF K
Sbjct: 242 IQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQARETVALGRELLGGNGIVTDFHVGK 301
Query: 317 FYRDAKIGTIYEGT 276
+ D + YEG+
Sbjct: 302 AFCDMESIYTYEGS 315
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 619 IGLCQGCMDATIPYTLERKQFGKKIYEFQ 533
IG+ G DA + Y ERKQFG + FQ
Sbjct: 201 IGIAAGVYDACLRYLGERKQFGAPLAAFQ 229
>04_01_0412 + 5469200-5469395,5469554-5469672
Length = 104
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 340 VKPTPPIKSMHFEVNVCAISEAKYLAIAASLTNSWPCSFSLAALYVRRRAASNCVCSV 513
+KP P S E C+ + A L+ TN WP + + RR S C+C +
Sbjct: 6 IKPPPEASSKSREEAACSEASATGLSRRVPNTNGWP---RVKGKHPHRRCLSACLCPI 60
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 646 GRIGIAAQMIGLCQGCMDATIPYTLERKQFG-KKIYEFQGISYQ 518
GR+GIA +G+ + + + Y L R+QFG K E + YQ
Sbjct: 346 GRVGIAYSSVGILKVSVTIAVRYALLRQQFGPPKKPEISVLDYQ 389
>03_01_0575 +
4247431-4247489,4248475-4248547,4248792-4249229,
4252122-4253339
Length = 595
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 635 YRGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQL 522
++G+DDRS +Y D + +I ++ + V GH L
Sbjct: 391 HKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHAL 428
>09_06_0034 + 20370672-20371109,20371120-20371515
Length = 277
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 674 QVRGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKEDL 543
QV WF +R+ W +R S L D+L E+++KE L
Sbjct: 70 QVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKL 113
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 162 CLYALKLRKINHKSFGAKALIVCIPFLIIWQR 257
CLY + ++H+ FG+K + +P + +W++
Sbjct: 410 CLYIWAILYLDHRDFGSKNVPKDVPRIAVWKQ 441
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 547 SSFRIVSFLVCKESLRPYSPDTDRSSE-PRYQSDLRSRNQPRTC 675
S RI F VC ES+R Y P D E R S R R C
Sbjct: 164 SRVRIGRFPVCPESMREYIPCLDNEEEIRRLPSTERGERFERHC 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,644,329
Number of Sequences: 37544
Number of extensions: 392321
Number of successful extensions: 976
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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