Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30784
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    55   6e-08
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    32   0.36 
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    30   1.4  
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi...    30   1.9  
At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-...    29   3.3  
At4g07460.1 68417.m01148 hypothetical protein                          29   4.4  
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    28   7.7  
At5g08260.1 68418.m00971 serine carboxypeptidase S10 family prot...    28   7.7  
At4g15800.1 68417.m02404 rapid alkalinization factor (RALF) fami...    28   7.7  
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr...    28   7.7  

>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 28/80 (35%), Positives = 45/80 (56%)
 Frame = -3

Query: 751 SGTCMVHFDNVKVHESSILGEXXXXXXXXXGFLNEGRIGIAAQMIGLCQGCMDATIPYTL 572
           S TC + F+N  V E +IL +           L+  R+ +AA  +G+ Q C+D  +PY  
Sbjct: 235 SDTCELVFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGPLGIMQACLDNVLPYIR 294

Query: 571 ERKQFGKKIYEFQGISYQIA 512
           +R+QFG+ + EFQ I  ++A
Sbjct: 295 QREQFGRPVGEFQFIQGKVA 314



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/82 (29%), Positives = 43/82 (52%)
 Frame = -2

Query: 509 LQTQLEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDF 330
           + T L+++R   Y+ AR  ++G    K+ A     A+E A  +  + I  +GG G+  ++
Sbjct: 316 MYTALQSSRSYVYSVARDCDNGKVDPKDCAGTILCAAERATQVALQAIQCLGGNGYINEY 375

Query: 329 PQEKFYRDAKIGTIYEGTSNMQ 264
              +  RDAK+  I  GTS ++
Sbjct: 376 ATGRLLRDAKLYEIGAGTSEIR 397


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 643 RIGIAAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQ 533
           R+ +A Q IG+  G  D    Y  ERKQFG  +  FQ
Sbjct: 288 RVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQ 324



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = -2

Query: 497 LEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEK 318
           ++A  L+ +   +L E G     +A++ K + S  A+   S   + +GG G   DF   K
Sbjct: 337 VQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAK 396

Query: 317 FYRDAKIGTIYEGT 276
            + D +    YEGT
Sbjct: 397 AFCDLEPIYTYEGT 410


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 316 NFSCGKSLVKPTPPIKSM 369
           +F CG+S+VKP+PPI ++
Sbjct: 393 SFGCGRSVVKPSPPIVAL 410


>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
           similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
           NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
           Phosphotransferase enzyme family, PF00441: Acyl-CoA
           dehydrogenase C-terminal domain, PF02770: Acyl-CoA
           dehydrogenase middle domain
          Length = 824

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/82 (28%), Positives = 33/82 (40%)
 Frame = -3

Query: 748 GTCMVHFDNVKVHESSILGEXXXXXXXXXGFLNEGRIGIAAQMIGLCQGCMDATIPYTLE 569
           G   + F+NV V   +IL           G L  GR+    ++IG  +  M+      L 
Sbjct: 646 GHAEISFENVVVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMELMAQRALS 705

Query: 568 RKQFGKKIYEFQGISYQIAHCR 503
           RK FGK I +       +A  R
Sbjct: 706 RKTFGKFIAQHGSFVSDLAKLR 727


>At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16)
           / HD-ZIP transcription factor 16 identical to
           homeodomain leucine-zipper protein ATHB-16 (GP:5668909|)
           {Arabidopsis thaliana}
          Length = 294

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 674 QVRGWFLERRSDWYRGSDDRSVSGLYGRNDSLHTRKETIRKED 546
           QV  WF  RR+ W     ++    L G+ DSL    +++R+++
Sbjct: 99  QVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDN 141


>At4g07460.1 68417.m01148 hypothetical protein 
          Length = 205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 494 EAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCID 363
           E++   +++AA + E G+EFVK     K+  +E   T T  C+D
Sbjct: 63  ESSLTTSWHAASM-ESGYEFVKVEESDKFDVAEAVSTDTIPCVD 105


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 646 GRIGIAAQMIGLCQGCMDATIPYTLERKQFG-KKIYEFQGISYQ 518
           GR+G+A   +G+ +      I Y+L R+QFG  K  E   + YQ
Sbjct: 339 GRVGLAYASVGVLKISATIAIRYSLLRQQFGPPKQPEVSILDYQ 382


>At5g08260.1 68418.m00971 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
           carboxypeptidase D - Triticum aestivum, PIR:A29639
          Length = 480

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 716 GARIEYPWRIW-QRVQVRGW 660
           G ++E PWR W  + QV GW
Sbjct: 415 GLKVESPWRSWFHKSQVAGW 434


>At4g15800.1 68417.m02404 rapid alkalinization factor (RALF) family
           protein similar to RALF precursor [Nicotiana tabacum]
           GI:16566316
          Length = 116

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 367 MHFEVNVCAISEAKYLAIAASLTNSWPCSFSLAALYVRRRAA 492
           M  E+N   ++  KY++  A   N+ PCS   A+ Y  RR A
Sbjct: 58  MDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGA 99


>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
           protein 
          Length = 571

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 599 TALT-QTDHLSRDTNPTFVQET--SRVLVP 679
           T LT QT  LS  + P+F+QET  +RVL+P
Sbjct: 95  TLLTNQTGWLSESSEPSFMQETICTRVLIP 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,840
Number of Sequences: 28952
Number of extensions: 332133
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)