Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30783
         (319 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1DWL7 Cluster: Putative uncharacterized protein; n=1; ...    38   0.057
UniRef50_Q17811 Cluster: Putative uncharacterized protein; n=2; ...    33   1.2  
UniRef50_UPI000038CEE9 Cluster: COG0507: ATP-dependent exoDNAse ...    33   1.6  
UniRef50_Q1EBN0 Cluster: Putative uncharacterized protein; n=2; ...    33   1.6  

>UniRef50_Q1DWL7 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 133

 Score = 37.5 bits (83), Expect = 0.057
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +2

Query: 8   RCKSQMKGSQCKRKSIYENKNVKFK*IQLICYKLVYILFSI-KLCFLHSHGFLFSNHQE- 181
           R K  MK  +  RK   ENKN K +   ++ YKL+Y+L  + K   +  H  + + H E 
Sbjct: 9   RIKEAMKKDEYARKINKENKNFKEEDGIILYYKLIYVLREVRKQVMVQEHDIITAGHFEI 68

Query: 182 ESLFSRLF*IYY 217
             +  ++  IYY
Sbjct: 69  NKIIEKITRIYY 80


>UniRef50_Q17811 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 400

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 29  GSQCKRKSIYENKNVKFK*IQLICYKLVYILFSIKLC---FLHSHGFLFSNHQEESL 190
           G+ CK    Y NK +K K ++L  Y   Y +FS K     FL+ H F F  H+ ESL
Sbjct: 86  GNNCKHFIQYPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIHCFKF--HKFESL 140


>UniRef50_UPI000038CEE9 Cluster: COG0507: ATP-dependent exoDNAse
           (exonuclease V), alpha subunit - helicase superfamily I
           member; n=1; Nostoc punctiforme PCC 73102|Rep: COG0507:
           ATP-dependent exoDNAse (exonuclease V), alpha subunit -
           helicase superfamily I member - Nostoc punctiforme PCC
           73102
          Length = 705

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
 Frame = +2

Query: 44  RKSIYENKNVK----FK*IQLICYKLVYILFS--IKLCFLHSHG 157
           R+  + N N+K    FK I L  Y+L++ILFS    + FLHSHG
Sbjct: 83  RRRRWHNPNIKSLLQFK-ISLFSYQLIFILFSYIYLMLFLHSHG 125


>UniRef50_Q1EBN0 Cluster: Putative uncharacterized protein; n=2;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 180

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 2   QDRCKSQMKGSQCKRKSIYENKNVKFK*IQLICYKLVYILFSI-KLCFLHSHGFLFSNHQ 178
           +++ K  MK  +  RK   EN+N K K   ++ ++L+Y+L  + K   +  H  + S H 
Sbjct: 21  EEKIKEAMKKDEYTRKINKENENFKKKDGMILYHELIYVLKEVRKQVIVQEHDTVTSGHF 80

Query: 179 E 181
           E
Sbjct: 81  E 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,399,094
Number of Sequences: 1657284
Number of extensions: 3237666
Number of successful extensions: 5159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5158
length of database: 575,637,011
effective HSP length: 82
effective length of database: 439,739,723
effective search space used: 10114013629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)