Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30783
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   2.8  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   4.8  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    23   8.5  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 50  SIYENKNVKFK*IQLICYKLVYILFSIKLCFLHSHGFLFSNHQEESLFSRL 202
           S++ +    F  +  +C     +L+S     LH+  FLFS+    S F RL
Sbjct: 9   SLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRL 59


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 153 MDFCFLIIKKNLCFHDCF 206
           +D C L+I+++ CF  CF
Sbjct: 571 LDQCILLIRESNCFVRCF 588


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 47  KSIYENKNVKFK*IQLICYKLVYILFSIKLCFLHSHGFLFSNHQEESLFSRLF*IYYKVI 226
           + I++  N+ F     I   L  ++F      ++ HGF FS   E++    L  +YY   
Sbjct: 65  QKIFQYYNLTFSIASAI---LALLIFEQVAPAIYKHGFFFSICNEKAWTQPLVFLYYCAY 121

Query: 227 MS 232
           +S
Sbjct: 122 IS 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,012,821
Number of Sequences: 5004
Number of extensions: 15738
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)