Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30783
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1059 - 30020877-30021539,30022367-30022375                       29   0.60 
06_03_0015 + 15431648-15431796,15431878-15432061,15435370-154354...    25   9.7  

>03_05_1059 - 30020877-30021539,30022367-30022375
          Length = 223

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query: 92  LICYKLV-YILFSIKLCFLHSHGF 160
           L C++L+ +++F I +C++ SHGF
Sbjct: 140 LFCFRLIIWLMFIIYICYICSHGF 163


>06_03_0015 +
           15431648-15431796,15431878-15432061,15435370-15435455,
           15436863-15436957,15437614-15437689,15438073-15438185,
           15439849-15439955,15440227-15440400,15440691-15440915
          Length = 402

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 2   QDRCKSQMKGSQCKRKSI---YENKNVKFK*IQLICYKLVYILFSI 130
           +D   + + G+  K + I   YE  ++ +K I  +C KL+Y  F+I
Sbjct: 244 KDSISTWLNGASVKLEEITVPYEGADLPYKSIGWLCRKLMYGYFAI 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,561,179
Number of Sequences: 37544
Number of extensions: 73992
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)