Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30782
(459 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62; Fungi/... 86 4e-16
UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n... 81 1e-14
UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29; Euka... 80 2e-14
UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55; Euka... 76 3e-13
UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2; Cryptos... 73 4e-12
UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1; B... 72 7e-12
UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n... 71 2e-11
UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5; ... 69 4e-11
UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative... 69 4e-11
UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, wh... 61 1e-08
UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3; ... 60 2e-08
UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1; Encepha... 58 1e-07
UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8; Archae... 51 1e-05
UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3; ... 51 1e-05
UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=... 46 3e-04
UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1; A... 46 4e-04
UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3; Archae... 45 0.001
UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1; ... 44 0.002
UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3; Methan... 44 0.002
UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilu... 42 0.006
UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3; Pyroba... 39 0.060
UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4; Thermo... 36 0.42
UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiell... 36 0.56
UniRef50_UPI000069E55B Cluster: Lymphocyte antigen 75 precursor ... 34 1.3
UniRef50_Q8A979 Cluster: Putative uncharacterized protein; n=2; ... 33 2.2
UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5; Methanococ... 33 3.9
UniRef50_A1IBG0 Cluster: Glycosyltransferases involved in cell w... 32 5.2
UniRef50_UPI00003AD95B Cluster: PREDICTED: hypothetical protein;... 32 6.8
UniRef50_Q9RMD2 Cluster: Putative emulsan repeating unit polymer... 31 9.0
UniRef50_A4WCY5 Cluster: Conserved DNA-binding protein; n=2; Ent... 31 9.0
UniRef50_Q9YG49 Cluster: Putative uncharacterized protein; n=1; ... 31 9.0
>UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62;
Fungi/Metazoa group|Rep: 60S ribosomal protein L34 -
Homo sapiens (Human)
Length = 117
Score = 85.8 bits (203), Expect = 4e-16
Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 211 PAERSRLCYRKKTVN 255
P RL KK V+
Sbjct: 61 PKVLMRLSKTKKHVS 75
Score = 48.8 bits (111), Expect = 6e-05
Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 347
R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 76 RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L34e - Antonospora locustae (Nosema locustae)
Length = 113
Score = 80.6 bits (190), Expect = 1e-14
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
MVQ LT R R +YN SNQ++I RTPG R VY KKP ++P+C +C+SKLRGI RPA
Sbjct: 1 MVQHLTHRGRRTYNNASNQKKIRRTPGNRRVYIPKKKPGRVPKCVKCRSKLRGIDICRPA 60
Query: 217 ERSRLCYRKKTV 252
+RL ++TV
Sbjct: 61 AFARLRKSQRTV 72
Score = 33.5 bits (73), Expect = 2.2
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIV 338
R YGG LC C++ RI+ AFL E++++
Sbjct: 74 RTYGGNLCGSCLENRILDAFLSAEEQLL 101
>UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29;
Eukaryota|Rep: 60S ribosomal protein L34-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 120
Score = 80.2 bits (189), Expect = 2e-14
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 217 E--RSRLCYRKKTVN 255
E RSRL ++TVN
Sbjct: 61 EYKRSRLSRNRRTVN 75
Score = 46.0 bits (104), Expect = 4e-04
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 76 RAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55;
Eukaryota|Rep: 60S ribosomal protein L34-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 121
Score = 76.2 bits (179), Expect = 3e-13
Identities = 36/73 (49%), Positives = 49/73 (67%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
M QR+TFRRR YNT+SN+ ++V+TPGG L Q+VKK P+CG C S L+GI RP
Sbjct: 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 217 ERSRLCYRKKTVN 255
+ + + KTV+
Sbjct: 61 QYATVSKTHKTVS 73
Score = 50.4 bits (115), Expect = 2e-05
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGG C CVK+RI+RAFLIEEQKIVK
Sbjct: 74 RAYGGSRCANCVKERIIRAFLIEEQKIVK 102
>UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L34 -
Cryptosporidium parvum Iowa II
Length = 138
Score = 72.5 bits (170), Expect = 4e-12
Identities = 34/73 (46%), Positives = 45/73 (61%)
Frame = +1
Query: 34 KMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARP 213
KM R+T+RR+ YNT SN+ R+V+TPGGR + Q + K P+CG CK L GI P
Sbjct: 3 KMSPRVTYRRKCRYNTPSNRVRVVKTPGGRNLIQNIGKVYSRPKCGDCKKPLAGIPACAP 62
Query: 214 AERSRLCYRKKTV 252
E L R++TV
Sbjct: 63 YEMKHLKKRERTV 75
Score = 48.8 bits (111), Expect = 6e-05
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGG C CV+QRI+RAFL+EEQK+VK
Sbjct: 77 RAYGGTKCPTCVRQRILRAFLLEEQKVVK 105
>UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1;
Babesia bovis|Rep: Ribosomal protein L34, putative -
Babesia bovis
Length = 157
Score = 71.7 bits (168), Expect = 7e-12
Identities = 36/73 (49%), Positives = 46/73 (63%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
MVQR+ RR YNT+SN++R V+TPGGRLV Q K + P+CG CK KL GI RP
Sbjct: 1 MVQRVVLRRHCRYNTRSNKQRKVKTPGGRLVVQRRVKVAQGPKCGDCKCKLAGIPALRPH 60
Query: 217 ERSRLCYRKKTVN 255
L R++ V+
Sbjct: 61 LYRNLKKRERRVS 73
Score = 52.0 bits (119), Expect = 6e-06
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGGV CHKCVK RI+RAFL EEQK +K
Sbjct: 74 RAYGGVRCHKCVKDRIIRAFLKEEQKALK 102
>UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n=4;
Eukaryota|Rep: 60S ribosomal protein L34a, putative -
Theileria parva
Length = 138
Score = 70.5 bits (165), Expect = 2e-11
Identities = 36/73 (49%), Positives = 43/73 (58%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
MVQR+ +RRR Y T SN + VRTPG RLV +KK K PRCG CK L G+ RP
Sbjct: 1 MVQRVHYRRRNKYKTPSNVVKRVRTPGARLVLHNLKKVGKRPRCGDCKRTLAGVSAVRPF 60
Query: 217 ERSRLCYRKKTVN 255
L R +TV+
Sbjct: 61 LYKNLKRRNRTVS 73
Score = 46.8 bits (106), Expect = 2e-04
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGG CH CVK RI+RAFL EEQK V+
Sbjct: 74 RPYGGSRCHNCVKDRIIRAFLKEEQKCVR 102
>UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5;
Plasmodium|Rep: Ribosomal protein L34e, putative -
Plasmodium yoelii yoelii
Length = 164
Score = 69.3 bits (162), Expect = 4e-11
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
M QR+ +R+ YNTKSN+ R +RTPGG+L +KK P+C CK+ ++G++ RPA
Sbjct: 1 MAQRVHYRKHNHYNTKSNKVRPIRTPGGKLTIHVIKKKAGKPKCADCKNPIQGVKALRPA 60
Query: 217 ERSRLCYRKK 246
+ R RKK
Sbjct: 61 DNQRA--RKK 68
Score = 46.4 bits (105), Expect = 3e-04
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGG +C KC K+RI+RAFL EEQK V+
Sbjct: 74 RAYGGSICAKCXKERIMRAFLFEEQKCVR 102
>UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative;
n=10; Eukaryota|Rep: Ribosomal protein L34 protein,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 192
Score = 69.3 bits (162), Expect = 4e-11
Identities = 34/72 (47%), Positives = 45/72 (62%)
Frame = +1
Query: 40 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 219
+ R F R YNT+SN+ RI++TPGG L Y ++KK P+CG C KL GI RP E
Sbjct: 81 IDRFLFYR---YNTRSNKVRIIKTPGGELRYLHIKKKGTAPKCGDCGIKLPGIPALRPRE 137
Query: 220 RSRLCYRKKTVN 255
S++ KKTV+
Sbjct: 138 YSQISRPKKTVS 149
Score = 50.0 bits (114), Expect = 2e-05
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +3
Query: 237 P*ENSERVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
P + R YGG C CVK RIVRAFLIEEQKIVK
Sbjct: 144 PKKTVSRAYGGSRCAGCVKDRIVRAFLIEEQKIVK 178
>UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 108
Score = 61.3 bits (142), Expect = 1e-08
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +1
Query: 46 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSK--LRGIQPARPAE 219
R+T+RRR SYNT+SN+ R V+TPGG +V QY K C L G++ RP +
Sbjct: 4 RITYRRRTSYNTRSNKIRKVKTPGGNVVVQYPNKKTSASTCADSNLNVVLNGLKRIRPTK 63
Query: 220 RSRLCYRKKTVN 255
+L R++TV+
Sbjct: 64 LKQLARRQRTVS 75
Score = 40.7 bits (91), Expect = 0.015
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGGVL +K RI+RAFL+EE KIVK
Sbjct: 76 RPYGGVLSAGALKNRIIRAFLVEEVKIVK 104
>UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L34 - Entamoeba histolytica HM-1:IMSS
Length = 137
Score = 60.1 bits (139), Expect = 2e-08
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 37 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
M R+T+ R+ SYNTKSN RIV+T GG + Q+ +K RCG C L GI+ RP
Sbjct: 1 MAVRVTYVRKHSYNTKSNGIRIVKTAGGNMTVQHRQKISNGVRCGDCGCVLAGIRHIRPH 60
Query: 217 ERSRLCYRKKTV 252
+ L K+TV
Sbjct: 61 QYGWLGKSKRTV 72
Score = 48.0 bits (109), Expect = 1e-04
Identities = 18/30 (60%), Positives = 25/30 (83%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 344
R YGGV CHKCV+++I+RAFLI E ++K+
Sbjct: 74 RAYGGVRCHKCVQKKILRAFLINEHNLIKL 103
>UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L34
- Encephalitozoon cuniculi
Length = 110
Score = 57.6 bits (133), Expect = 1e-07
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +1
Query: 40 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 219
++ + + +Y T+SN+RR VRTP G+LV + VKK K RC +C + L I RPAE
Sbjct: 1 MKNVLIHKGATYKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAE 60
Query: 220 RSRLCYRKKTVN 255
SR + VN
Sbjct: 61 FSRQKVSARRVN 72
Score = 34.7 bits (76), Expect = 0.97
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIV 338
R YG C +CV+++I+ AFL E++IV
Sbjct: 73 RPYGATTCGRCVREKIISAFLGNEERIV 100
>UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8;
Archaea|Rep: 50S ribosomal protein L34e - Pyrococcus
abyssi
Length = 91
Score = 51.2 bits (117), Expect = 1e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 73 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKK 246
Y ++S +R+ VRTPGGR+V + ++ KI C C L GI RP E +L KK
Sbjct: 5 YRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKK 62
>UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein L34e,
putative - Trichomonas vaginalis G3
Length = 116
Score = 50.8 bits (116), Expect = 1e-05
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +1
Query: 46 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 225
R T RR L ++T N+ VRTPG +LV Y+ K + P C + ++ GI+ + E
Sbjct: 5 RYTLRRSLGFHTIRNRVAPVRTPGNKLVAHYIAKRQNGPHCAETGKRINGIKCVKTCELR 64
Query: 226 RLCYRKKTVN 255
R+ ++TV+
Sbjct: 65 RMKKNQRTVS 74
Score = 32.3 bits (70), Expect = 5.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEE 326
R YGGV C VK RI+ AF+ EE
Sbjct: 75 RPYGGVYCGAVVKDRIINAFMEEE 98
>UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=10;
Trypanosomatidae|Rep: 60S ribosomal protein L34,
putative - Leishmania major
Length = 168
Score = 46.4 bits (105), Expect = 3e-04
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
R YGGVL H V+ R+VRAFL+EEQ+IVK
Sbjct: 77 RAYGGVLSHDQVRDRVVRAFLVEEQRIVK 105
Score = 38.7 bits (86), Expect = 0.060
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 46 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQ 135
R+ +RRR+ Y T+ N+ ++VRTPG +LV Q
Sbjct: 5 RVQYRRRMHYATRGNRMKMVRTPGNKLVMQ 34
>UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1;
Aedes aegypti|Rep: Ribosomal protein L34, putative -
Aedes aegypti (Yellowfever mosquito)
Length = 123
Score = 46.0 bits (104), Expect = 4e-04
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +3
Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 347
R +GGV+CH+ +RI+RAFLI+EQK+VKVL
Sbjct: 69 RTFGGVICHR---ERIIRAFLIDEQKVVKVL 96
Score = 44.8 bits (101), Expect = 0.001
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +1
Query: 64 RLSYNTKSNQRRIVRTPGG-RLVYQYVKKPKKIPRCGQCKSK 186
++SYNT N+RR+VRT G RLVY ++KK + + +C QCK +
Sbjct: 9 KMSYNT--NKRRVVRTLGSDRLVYLFIKKQRIVSKCCQCKGE 48
>UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3;
Archaea|Rep: 50S ribosomal protein L34e - Methanopyrus
kandleri
Length = 113
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 73 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 219
Y ++S +R RTPGGR V + KK P+CG C +L G+ R E
Sbjct: 6 YRSRSCRRVYKRTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVE 54
>UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 97
Score = 43.6 bits (98), Expect = 0.002
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 100 IVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 252
+++TPG + Y ++KK IPRCG L+GI +RL + KKTV
Sbjct: 26 VIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALVLVSLTRLSHNKKTV 76
>UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3;
Methanobacteriaceae|Rep: 50S ribosomal protein L34e -
Methanobacterium thermoautotrophicum
Length = 88
Score = 43.6 bits (98), Expect = 0.002
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +1
Query: 67 LSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKK 246
L Y ++S +R +TPGGR V Y +K C C L G+ RP E +L KK
Sbjct: 4 LRYRSRSYKRIFKKTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIRKLSKSKK 63
Query: 247 TVN 255
N
Sbjct: 64 RPN 66
>UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L34e - Thermofilum
pendens (strain Hrk 5)
Length = 91
Score = 41.9 bits (94), Expect = 0.006
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 64 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGI 198
R + ++S +R++VRTPGGRL + K P+C C ++G+
Sbjct: 3 RPALRSRSKKRKLVRTPGGRLALHVIDKKHDYPKCAICGRPIQGV 47
>UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3;
Pyrobaculum|Rep: 50S ribosomal protein L34e -
Pyrobaculum aerophilum
Length = 84
Score = 38.7 bits (86), Expect = 0.060
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 64 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRC 168
R +Y ++S +R V+TPGGR V Y K+ K +P+C
Sbjct: 3 RPAYRSRSVRRIKVKTPGGRTVIHYEKRAKGVPKC 37
>UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4;
Thermoprotei|Rep: 50S ribosomal protein L34e - Aeropyrum
pernix
Length = 95
Score = 35.9 bits (79), Expect = 0.42
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 64 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRL 231
R ++S +R RTPGG V Y ++ RC +C L G+ RP RL
Sbjct: 8 RPGLRSRSLRRVYRRTPGGSTVVHYERRKPGPARCARCGRPLGGVPRGRPPRVRRL 63
>UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiella
natans|Rep: Ribosomal protein L34 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 90
Score = 35.5 bits (78), Expect = 0.56
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 46 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRC 168
R+T ++R +Y T SN+ I + GG+ V +Y+KK + +C
Sbjct: 2 RITLKKRKTYKTNSNKFIIKKILGGKYVAKYIKKLRTSNKC 42
>UniRef50_UPI000069E55B Cluster: Lymphocyte antigen 75 precursor
(DEC-205) (gp200-MR6) (CD205 antigen).; n=1; Xenopus
tropicalis|Rep: Lymphocyte antigen 75 precursor (DEC-205)
(gp200-MR6) (CD205 antigen). - Xenopus tropicalis
Length = 1716
Score = 34.3 bits (75), Expect = 1.3
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 339 SQFFVLQ*GRL*QCVA*HIYGRGHHHKHVHCFLTVAKTGTFSRS-SWLDTTEFALALTTP 163
S+ + Q L Q + G HH V C LT +TG S + W +++ + L TTP
Sbjct: 1543 SKLGICQSANLLQTAENDVIENGKHHMTVLCSLTSFRTGCPSPAWVWFNSSCYTLLHTTP 1602
Query: 162 WDLLGL 145
DLL +
Sbjct: 1603 KDLLNI 1608
>UniRef50_Q8A979 Cluster: Putative uncharacterized protein; n=2;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides thetaiotaomicron
Length = 119
Score = 33.5 bits (73), Expect = 2.2
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 10 YFISYFSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKK-IPRCGQCKSK 186
Y +S +L FR+R+ NT+ N + GG + + + K IP C +C K
Sbjct: 44 YHLSVMFCPSCHKLMFRKRVFPNTRDNNIMV----GGHVELVFFPQFKYIIPICKECNDK 99
Query: 187 LRGIQPARPAERSRLC 234
+ ++P + E RLC
Sbjct: 100 KQNLRPFK-VELDRLC 114
>UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5;
Methanococcus|Rep: Ribosomal protein L34e -
Methanococcus maripaludis
Length = 89
Score = 32.7 bits (71), Expect = 3.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 73 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKK 246
Y + S+++ + PG + Y +K + CG C + L G+ R E ++L +K
Sbjct: 6 YKSGSSKKVYRKAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEITKLAKTEK 63
>UniRef50_A1IBG0 Cluster: Glycosyltransferases involved in cell wall
biogenesis-like; n=2; Candidatus Desulfococcus
oleovorans Hxd3|Rep: Glycosyltransferases involved in
cell wall biogenesis-like - Candidatus Desulfococcus
oleovorans Hxd3
Length = 720
Score = 32.3 bits (70), Expect = 5.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 235 SKDGNVQQV*LAGYHGVCSCTDHTLGSSWAFLHTDK-PSGHPVSLLFFFDLI 83
++ G + + G GV G+SW F + K PS HP+SL F+D +
Sbjct: 442 TRQGRLTALLCLGAIGVSQLVPALTGNSWFFYYLYKVPSSHPLSLENFYDFL 493
>UniRef50_UPI00003AD95B Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 1221
Score = 31.9 bits (69), Expect = 6.8
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 373 DLVLACCALRTFTIFCSSMRKALTMRCLTHLWQR 272
DL LA C T C+ AL CLT LW R
Sbjct: 421 DLTLAVCLSVFITFLCAFCLGALARPCLTRLWMR 454
>UniRef50_Q9RMD2 Cluster: Putative emulsan repeating unit
polymerase; n=1; Acinetobacter lwoffii|Rep: Putative
emulsan repeating unit polymerase - Acinetobacter
lwoffii
Length = 436
Score = 31.5 bits (68), Expect = 9.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 4 YIYFISYFSLKMVQRLTFRRRLSYNT 81
+I+F SYFS + L FR++LS NT
Sbjct: 102 FIFFDSYFSRVKIPNLNFRKKLSLNT 127
>UniRef50_A4WCY5 Cluster: Conserved DNA-binding protein; n=2;
Enterobacteriaceae|Rep: Conserved DNA-binding protein -
Enterobacter sp. 638
Length = 624
Score = 31.5 bits (68), Expect = 9.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 264 HKHVHCFLTVAKTGTFSRSSWLDTTEFALALTTPWDLL 151
H H CFL + KT S+L++ ++ +L+ W+++
Sbjct: 335 HDHKSCFLKIRKTSLDGGKSFLNSNDYNYSLSELWEMI 372
>UniRef50_Q9YG49 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 171
Score = 31.5 bits (68), Expect = 9.0
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = -3
Query: 388 VAFFADLVLACCALRTFTIFCSSMRKALTMRCLTHLWQRTPP*TRSLFSYGSKD----GN 221
+A A L L A+ + I+ S T++ +T + T + YG+ G
Sbjct: 5 IAIAAVLALVFIAIGAYAIYTSEYSDVSTLQSVTRASRVTVQAGVAYLGYGTATVIYGGK 64
Query: 220 VQQV*LAGYHGVCSCTDHTLGSSWAFLHTDKPSGHPVSLLFFFD 89
+ G +G+ TD + GSS+AF + G+ V+ L+ D
Sbjct: 65 TYTLEARGAYGILMPTDGS-GSSYAFFVMEGEKGYKVAALYELD 107
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,448,618
Number of Sequences: 1657284
Number of extensions: 7940711
Number of successful extensions: 21300
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 20300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21253
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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